miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 5' -53.8 NC_001847.1 + 437 0.67 0.900923
Target:  5'- cGGCGgcGG-CGGCGGCaGCAGCggcgGCg -3'
miRNA:   3'- -UCGCa-CCaGCUGCCGaUGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 467 0.67 0.900923
Target:  5'- cGGCGgcGG-CGGCGGCaGCAGCggcgGCg -3'
miRNA:   3'- -UCGCa-CCaGCUGCCGaUGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 4468 0.7 0.796841
Target:  5'- cGCGcGGUUGACGGCgGC--CUUGCg -3'
miRNA:   3'- uCGCaCCAGCUGCCGaUGuuGAACGa -5'
6490 5' -53.8 NC_001847.1 + 11117 0.67 0.907353
Target:  5'- uGGCGcUGGagGACGGCUucuuggacGCGGCggaGCUg -3'
miRNA:   3'- -UCGC-ACCagCUGCCGA--------UGUUGaa-CGA- -5'
6490 5' -53.8 NC_001847.1 + 12350 0.68 0.868238
Target:  5'- gAGCGgugGGccuggcucgggagcgUCGGCGGCUGCGGCcucgggGCg -3'
miRNA:   3'- -UCGCa--CC---------------AGCUGCCGAUGUUGaa----CGa -5'
6490 5' -53.8 NC_001847.1 + 14677 0.67 0.907353
Target:  5'- cGGCGcGGcCGGCGGCgcgGCGAUggaGCa -3'
miRNA:   3'- -UCGCaCCaGCUGCCGa--UGUUGaa-CGa -5'
6490 5' -53.8 NC_001847.1 + 16616 0.66 0.949323
Target:  5'- uGCGUGGUCuuuggggGGgGGCgcgGCGGCUuUGCc -3'
miRNA:   3'- uCGCACCAG-------CUgCCGa--UGUUGA-ACGa -5'
6490 5' -53.8 NC_001847.1 + 17288 0.66 0.930568
Target:  5'- cGCGUGGagcgCGGCGGgUAguACUcgGCg -3'
miRNA:   3'- uCGCACCa---GCUGCCgAUguUGAa-CGa -5'
6490 5' -53.8 NC_001847.1 + 19631 0.67 0.925143
Target:  5'- gGGCGccgGcGUCGGCGcGCgGCcGCUUGCg -3'
miRNA:   3'- -UCGCa--C-CAGCUGC-CGaUGuUGAACGa -5'
6490 5' -53.8 NC_001847.1 + 19910 1.08 0.00414
Target:  5'- cAGCGUGGUCGACGGCUACAACUUGCUg -3'
miRNA:   3'- -UCGCACCAGCUGCCGAUGUUGAACGA- -5'
6490 5' -53.8 NC_001847.1 + 21860 0.71 0.728692
Target:  5'- cAGCagGUGGUgCGGgGGCUGCGGCgcGCUg -3'
miRNA:   3'- -UCG--CACCA-GCUgCCGAUGUUGaaCGA- -5'
6490 5' -53.8 NC_001847.1 + 22087 0.69 0.823884
Target:  5'- cAGaCGUGcGcCGACGcGCUGCGGCU-GCUg -3'
miRNA:   3'- -UC-GCAC-CaGCUGC-CGAUGUUGAaCGA- -5'
6490 5' -53.8 NC_001847.1 + 25127 0.68 0.880172
Target:  5'- gAGCG-GG-CGGCGGCcGCGGCU-GCc -3'
miRNA:   3'- -UCGCaCCaGCUGCCGaUGUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 27734 0.67 0.925143
Target:  5'- cGGCGgaagccgcGG-CGGCGGUUGCGGCgggggGCUg -3'
miRNA:   3'- -UCGCa-------CCaGCUGCCGAUGUUGaa---CGA- -5'
6490 5' -53.8 NC_001847.1 + 27894 0.69 0.849269
Target:  5'- uGGCGaGGUCGcCGGCccgGCcgcGCUUGCg -3'
miRNA:   3'- -UCGCaCCAGCuGCCGa--UGu--UGAACGa -5'
6490 5' -53.8 NC_001847.1 + 29075 0.7 0.796841
Target:  5'- uGCGUGG-CGGUGGCggGCGGCgUGCUg -3'
miRNA:   3'- uCGCACCaGCUGCCGa-UGUUGaACGA- -5'
6490 5' -53.8 NC_001847.1 + 32657 0.69 0.832541
Target:  5'- gGGCGaGGUgGACGGCgccgGCGGCgcggGCc -3'
miRNA:   3'- -UCGCaCCAgCUGCCGa---UGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 32962 0.69 0.849269
Target:  5'- cAGCGcGGUggccgacuUGGCGGCUG-AGCUUGCg -3'
miRNA:   3'- -UCGCaCCA--------GCUGCCGAUgUUGAACGa -5'
6490 5' -53.8 NC_001847.1 + 33148 0.66 0.935741
Target:  5'- gAGUG-GGUCGAgGGCgcucugguggGCAGCUuUGCc -3'
miRNA:   3'- -UCGCaCCAGCUgCCGa---------UGUUGA-ACGa -5'
6490 5' -53.8 NC_001847.1 + 33149 0.71 0.758629
Target:  5'- cGCGUGGcgagcgCGGCGGUUGCGccGCUgcagcgGCUg -3'
miRNA:   3'- uCGCACCa-----GCUGCCGAUGU--UGAa-----CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.