miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 5' -53.8 NC_001847.1 + 33149 0.71 0.758629
Target:  5'- cGCGUGGcgagcgCGGCGGUUGCGccGCUgcagcgGCUg -3'
miRNA:   3'- uCGCACCa-----GCUGCCGAUGU--UGAa-----CGA- -5'
6490 5' -53.8 NC_001847.1 + 103280 0.67 0.900923
Target:  5'- cGGCGgcGG-CGGCGGCaGCAGCggcgGCg -3'
miRNA:   3'- -UCGCa-CCaGCUGCCGaUGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 103250 0.67 0.900923
Target:  5'- cGGCGgcGG-CGGCGGCaGCAGCggcgGCg -3'
miRNA:   3'- -UCGCa-CCaGCUGCCGaUGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 97736 0.67 0.900923
Target:  5'- aAGCGgaagcGG-CGGCGGCgGCAgauACUUGCc -3'
miRNA:   3'- -UCGCa----CCaGCUGCCGaUGU---UGAACGa -5'
6490 5' -53.8 NC_001847.1 + 72964 0.68 0.887328
Target:  5'- cGCGUGGaccucggCGugGGCUACAcg--GCg -3'
miRNA:   3'- uCGCACCa------GCugCCGAUGUugaaCGa -5'
6490 5' -53.8 NC_001847.1 + 127940 0.68 0.880172
Target:  5'- gAGCG-GG-CGGCGGCcGCGGCU-GCc -3'
miRNA:   3'- -UCGCaCCaGCUGCCGaUGUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 122864 0.68 0.872782
Target:  5'- uGGUGcUGGUgGGCGcGCUugGACUcGCg -3'
miRNA:   3'- -UCGC-ACCAgCUGC-CGAugUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 81577 0.69 0.849269
Target:  5'- cGCGgGGcCGGCGGCUACGggaGCgucguugUGCa -3'
miRNA:   3'- uCGCaCCaGCUGCCGAUGU---UGa------ACGa -5'
6490 5' -53.8 NC_001847.1 + 32962 0.69 0.849269
Target:  5'- cAGCGcGGUggccgacuUGGCGGCUG-AGCUUGCg -3'
miRNA:   3'- -UCGCaCCA--------GCUGCCGAUgUUGAACGa -5'
6490 5' -53.8 NC_001847.1 + 27894 0.69 0.849269
Target:  5'- uGGCGaGGUCGcCGGCccgGCcgcGCUUGCg -3'
miRNA:   3'- -UCGCaCCAGCuGCCGa--UGu--UGAACGa -5'
6490 5' -53.8 NC_001847.1 + 87493 0.69 0.849269
Target:  5'- uGGcCGUGcUCGGCGGCU---GCUUGCa -3'
miRNA:   3'- -UC-GCACcAGCUGCCGAuguUGAACGa -5'
6490 5' -53.8 NC_001847.1 + 32657 0.69 0.832541
Target:  5'- gGGCGaGGUgGACGGCgccgGCGGCgcggGCc -3'
miRNA:   3'- -UCGCaCCAgCUGCCGa---UGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 65493 0.69 0.823884
Target:  5'- cGCGUaccgGGUCGcggcGCGGCUGgGACUcGCg -3'
miRNA:   3'- uCGCA----CCAGC----UGCCGAUgUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 22087 0.69 0.823884
Target:  5'- cAGaCGUGcGcCGACGcGCUGCGGCU-GCUg -3'
miRNA:   3'- -UC-GCAC-CaGCUGC-CGAUGUUGAaCGA- -5'
6490 5' -53.8 NC_001847.1 + 84029 0.69 0.823884
Target:  5'- --gGUGGUCGACGGCg--AGCUcGCg -3'
miRNA:   3'- ucgCACCAGCUGCCGaugUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 80690 0.7 0.806025
Target:  5'- cGCGccGG-CGGCGGCUGCGGCUggaagaaGCa -3'
miRNA:   3'- uCGCa-CCaGCUGCCGAUGUUGAa------CGa -5'
6490 5' -53.8 NC_001847.1 + 29075 0.7 0.796841
Target:  5'- uGCGUGG-CGGUGGCggGCGGCgUGCUg -3'
miRNA:   3'- uCGCACCaGCUGCCGa-UGUUGaACGA- -5'
6490 5' -53.8 NC_001847.1 + 4468 0.7 0.796841
Target:  5'- cGCGcGGUUGACGGCgGC--CUUGCg -3'
miRNA:   3'- uCGCaCCAGCUGCCGaUGuuGAACGa -5'
6490 5' -53.8 NC_001847.1 + 76698 0.7 0.777055
Target:  5'- cGGCGcugcggcuggaaaUGGcCGACGGCgagcucguCGACUUGCUc -3'
miRNA:   3'- -UCGC-------------ACCaGCUGCCGau------GUUGAACGA- -5'
6490 5' -53.8 NC_001847.1 + 21860 0.71 0.728692
Target:  5'- cAGCagGUGGUgCGGgGGCUGCGGCgcGCUg -3'
miRNA:   3'- -UCG--CACCA-GCUgCCGAUGUUGaaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.