miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 5' -53.8 NC_001847.1 + 67637 0.69 0.849269
Target:  5'- cGGCGgagacGG-CGGCGGCUACGAUUacgacugugacUGCg -3'
miRNA:   3'- -UCGCa----CCaGCUGCCGAUGUUGA-----------ACGa -5'
6490 5' -53.8 NC_001847.1 + 125536 0.66 0.949755
Target:  5'- gGGCGcagcuacGGUCGuccccGCGGCUGCGGCUcgaucGCg -3'
miRNA:   3'- -UCGCa------CCAGC-----UGCCGAUGUUGAa----CGa -5'
6490 5' -53.8 NC_001847.1 + 111028 0.66 0.949755
Target:  5'- cGCGcGGgcucaugccguUCGACGGCUACGAgg-GCg -3'
miRNA:   3'- uCGCaCC-----------AGCUGCCGAUGUUgaaCGa -5'
6490 5' -53.8 NC_001847.1 + 467 0.67 0.900923
Target:  5'- cGGCGgcGG-CGGCGGCaGCAGCggcgGCg -3'
miRNA:   3'- -UCGCa-CCaGCUGCCGaUGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 437 0.67 0.900923
Target:  5'- cGGCGgcGG-CGGCGGCaGCAGCggcgGCg -3'
miRNA:   3'- -UCGCa-CCaGCUGCCGaUGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 35299 0.66 0.949755
Target:  5'- uGCGUGGgCGGgGGCggGCAACgcaaaGCa -3'
miRNA:   3'- uCGCACCaGCUgCCGa-UGUUGaa---CGa -5'
6490 5' -53.8 NC_001847.1 + 123708 0.66 0.935741
Target:  5'- uGGCGcggGGUCGcACGGCaGCA-CUUcGCUc -3'
miRNA:   3'- -UCGCa--CCAGC-UGCCGaUGUuGAA-CGA- -5'
6490 5' -53.8 NC_001847.1 + 87757 0.67 0.919465
Target:  5'- cGUGcGGcUCGACGGCUACGGgaaGCUa -3'
miRNA:   3'- uCGCaCC-AGCUGCCGAUGUUgaaCGA- -5'
6490 5' -53.8 NC_001847.1 + 38962 0.68 0.857324
Target:  5'- gAGCGccaUGG-CGGCGGCcGCGGCgggGCUu -3'
miRNA:   3'- -UCGC---ACCaGCUGCCGaUGUUGaa-CGA- -5'
6490 5' -53.8 NC_001847.1 + 73811 0.73 0.603632
Target:  5'- cGcCGUGGUCGcCGcGCUGCAGCggcUGCg -3'
miRNA:   3'- uC-GCACCAGCuGC-CGAUGUUGa--ACGa -5'
6490 5' -53.8 NC_001847.1 + 19910 1.08 0.00414
Target:  5'- cAGCGUGGUCGACGGCUACAACUUGCUg -3'
miRNA:   3'- -UCGCACCAGCUGCCGAUGUUGAACGA- -5'
6490 5' -53.8 NC_001847.1 + 115226 0.66 0.945332
Target:  5'- uGCGgcaGGUCGGCGGCgACGcCcucgUGCg -3'
miRNA:   3'- uCGCa--CCAGCUGCCGaUGUuGa---ACGa -5'
6490 5' -53.8 NC_001847.1 + 77292 0.66 0.945332
Target:  5'- cGCGUGGU-GAuCGGgUACAGCgccuucauggggUUGCUg -3'
miRNA:   3'- uCGCACCAgCU-GCCgAUGUUG------------AACGA- -5'
6490 5' -53.8 NC_001847.1 + 70438 0.68 0.872782
Target:  5'- aAGCGUuGUCGACGGCcGC-GCgcgGCa -3'
miRNA:   3'- -UCGCAcCAGCUGCCGaUGuUGaa-CGa -5'
6490 5' -53.8 NC_001847.1 + 12350 0.68 0.868238
Target:  5'- gAGCGgugGGccuggcucgggagcgUCGGCGGCUGCGGCcucgggGCg -3'
miRNA:   3'- -UCGCa--CC---------------AGCUGCCGAUGUUGaa----CGa -5'
6490 5' -53.8 NC_001847.1 + 33148 0.66 0.935741
Target:  5'- gAGUG-GGUCGAgGGCgcucugguggGCAGCUuUGCc -3'
miRNA:   3'- -UCGCaCCAGCUgCCGa---------UGUUGA-ACGa -5'
6490 5' -53.8 NC_001847.1 + 97002 0.71 0.748755
Target:  5'- gAGCG-GGUCGGCGGCgcugGCcGCgggggGCa -3'
miRNA:   3'- -UCGCaCCAGCUGCCGa---UGuUGaa---CGa -5'
6490 5' -53.8 NC_001847.1 + 125464 0.74 0.572283
Target:  5'- gGGCG-GGUCGGCGGCagcucGCGGCggGCg -3'
miRNA:   3'- -UCGCaCCAGCUGCCGa----UGUUGaaCGa -5'
6490 5' -53.8 NC_001847.1 + 80236 0.66 0.933702
Target:  5'- cGCGggccacguugccgGGUCGACGGCgugccGCAGCaggGCc -3'
miRNA:   3'- uCGCa------------CCAGCUGCCGa----UGUUGaa-CGa -5'
6490 5' -53.8 NC_001847.1 + 25127 0.68 0.880172
Target:  5'- gAGCG-GG-CGGCGGCcGCGGCU-GCc -3'
miRNA:   3'- -UCGCaCCaGCUGCCGaUGUUGAaCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.