miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 5' -53.8 NC_001847.1 + 19631 0.67 0.925143
Target:  5'- gGGCGccgGcGUCGGCGcGCgGCcGCUUGCg -3'
miRNA:   3'- -UCGCa--C-CAGCUGC-CGaUGuUGAACGa -5'
6490 5' -53.8 NC_001847.1 + 53828 0.67 0.919465
Target:  5'- gGGCGcggcUGG-CGGCGGCaGCGGCggcGCUg -3'
miRNA:   3'- -UCGC----ACCaGCUGCCGaUGUUGaa-CGA- -5'
6490 5' -53.8 NC_001847.1 + 37577 0.67 0.913534
Target:  5'- cGGCGcUGGcCGcuGCGGCUGCGGCg-GCc -3'
miRNA:   3'- -UCGC-ACCaGC--UGCCGAUGUUGaaCGa -5'
6490 5' -53.8 NC_001847.1 + 14677 0.67 0.907353
Target:  5'- cGGCGcGGcCGGCGGCgcgGCGAUggaGCa -3'
miRNA:   3'- -UCGCaCCaGCUGCCGa--UGUUGaa-CGa -5'
6490 5' -53.8 NC_001847.1 + 11117 0.67 0.907353
Target:  5'- uGGCGcUGGagGACGGCUucuuggacGCGGCggaGCUg -3'
miRNA:   3'- -UCGC-ACCagCUGCCGA--------UGUUGaa-CGA- -5'
6490 5' -53.8 NC_001847.1 + 119864 0.67 0.900923
Target:  5'- cAGCGUcgGGaUCGgcauuGCGGCUGCGGCgaucgcgUGCg -3'
miRNA:   3'- -UCGCA--CC-AGC-----UGCCGAUGUUGa------ACGa -5'
6490 5' -53.8 NC_001847.1 + 37917 0.67 0.913534
Target:  5'- cGCGUGc-CGACGGC-GCAGCUggaGCa -3'
miRNA:   3'- uCGCACcaGCUGCCGaUGUUGAa--CGa -5'
6490 5' -53.8 NC_001847.1 + 103280 0.67 0.900923
Target:  5'- cGGCGgcGG-CGGCGGCaGCAGCggcgGCg -3'
miRNA:   3'- -UCGCa-CCaGCUGCCGaUGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 97736 0.67 0.900923
Target:  5'- aAGCGgaagcGG-CGGCGGCgGCAgauACUUGCc -3'
miRNA:   3'- -UCGCa----CCaGCUGCCGaUGU---UGAACGa -5'
6490 5' -53.8 NC_001847.1 + 103250 0.67 0.900923
Target:  5'- cGGCGgcGG-CGGCGGCaGCAGCggcgGCg -3'
miRNA:   3'- -UCGCa-CCaGCUGCCGaUGUUGaa--CGa -5'
6490 5' -53.8 NC_001847.1 + 122864 0.68 0.872782
Target:  5'- uGGUGcUGGUgGGCGcGCUugGACUcGCg -3'
miRNA:   3'- -UCGC-ACCAgCUGC-CGAugUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 127940 0.68 0.880172
Target:  5'- gAGCG-GG-CGGCGGCcGCGGCU-GCc -3'
miRNA:   3'- -UCGCaCCaGCUGCCGaUGUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 72964 0.68 0.887328
Target:  5'- cGCGUGGaccucggCGugGGCUACAcg--GCg -3'
miRNA:   3'- uCGCACCa------GCugCCGAUGUugaaCGa -5'
6490 5' -53.8 NC_001847.1 + 25127 0.68 0.880172
Target:  5'- gAGCG-GG-CGGCGGCcGCGGCU-GCc -3'
miRNA:   3'- -UCGCaCCaGCUGCCGaUGUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 70438 0.68 0.872782
Target:  5'- aAGCGUuGUCGACGGCcGC-GCgcgGCa -3'
miRNA:   3'- -UCGCAcCAGCUGCCGaUGuUGaa-CGa -5'
6490 5' -53.8 NC_001847.1 + 12350 0.68 0.868238
Target:  5'- gAGCGgugGGccuggcucgggagcgUCGGCGGCUGCGGCcucgggGCg -3'
miRNA:   3'- -UCGCa--CC---------------AGCUGCCGAUGUUGaa----CGa -5'
6490 5' -53.8 NC_001847.1 + 38962 0.68 0.857324
Target:  5'- gAGCGccaUGG-CGGCGGCcGCGGCgggGCUu -3'
miRNA:   3'- -UCGC---ACCaGCUGCCGaUGUUGaa-CGA- -5'
6490 5' -53.8 NC_001847.1 + 84029 0.69 0.823884
Target:  5'- --gGUGGUCGACGGCg--AGCUcGCg -3'
miRNA:   3'- ucgCACCAGCUGCCGaugUUGAaCGa -5'
6490 5' -53.8 NC_001847.1 + 32962 0.69 0.849269
Target:  5'- cAGCGcGGUggccgacuUGGCGGCUG-AGCUUGCg -3'
miRNA:   3'- -UCGCaCCA--------GCUGCCGAUgUUGAACGa -5'
6490 5' -53.8 NC_001847.1 + 81577 0.69 0.849269
Target:  5'- cGCGgGGcCGGCGGCUACGggaGCgucguugUGCa -3'
miRNA:   3'- uCGCaCCaGCUGCCGAUGU---UGa------ACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.