miRNA display CGI


Results 61 - 80 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 90836 0.66 0.887328
Target:  5'- ------aCCGCucuggcgcuGGCCCGCCGCGccGCg -3'
miRNA:   3'- auauuuaGGCGuc-------UCGGGCGGCGU--CG- -5'
6491 3' -55 NC_001847.1 + 129931 0.66 0.887328
Target:  5'- ------cCCGCc--GgCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 62192 0.66 0.893566
Target:  5'- ---cAAUCCGCGcgaagacGGGCUCGUcccagaagCGCAGCg -3'
miRNA:   3'- auauUUAGGCGU-------CUCGGGCG--------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 51973 0.66 0.907352
Target:  5'- ----cGUCCGCc-AGCCCGUCG-GGCg -3'
miRNA:   3'- auauuUAGGCGucUCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 81247 0.66 0.887328
Target:  5'- ------gCCagGCuGGGCCUGCCGCuGCu -3'
miRNA:   3'- auauuuaGG--CGuCUCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 11967 0.66 0.887328
Target:  5'- gAUGGG-CgGCuGAGCgCCGCCGC-GCc -3'
miRNA:   3'- aUAUUUaGgCGuCUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 38076 0.66 0.907352
Target:  5'- -------gCGCGGcGgCCGCCGCGGUc -3'
miRNA:   3'- auauuuagGCGUCuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 75444 0.66 0.907352
Target:  5'- ------aCCGCGGAGUCCugGCUGCuguuGCc -3'
miRNA:   3'- auauuuaGGCGUCUCGGG--CGGCGu---CG- -5'
6491 3' -55 NC_001847.1 + 67702 0.66 0.907352
Target:  5'- -----cUCgGCGaggugcucGAGCgCGCCGUAGCa -3'
miRNA:   3'- auauuuAGgCGU--------CUCGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104438 0.66 0.900922
Target:  5'- ------gCCGCGGcAGCaCCGCgGCGcGCa -3'
miRNA:   3'- auauuuaGGCGUC-UCG-GGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 2018 0.66 0.877979
Target:  5'- ------gCCGCAGGuuuuccagcacggcGCCgGCCGUGGCc -3'
miRNA:   3'- auauuuaGGCGUCU--------------CGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 55575 0.66 0.907352
Target:  5'- --aGAggCCGC-GAGCCCGgCGCcccccGCg -3'
miRNA:   3'- auaUUuaGGCGuCUCGGGCgGCGu----CG- -5'
6491 3' -55 NC_001847.1 + 38953 0.66 0.907352
Target:  5'- --gGGggCCGC-GAGCgCCauggcggcgGCCGCGGCg -3'
miRNA:   3'- auaUUuaGGCGuCUCG-GG---------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 106019 0.66 0.907352
Target:  5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3'
miRNA:   3'- auauUUAGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 82224 0.66 0.907352
Target:  5'- -----cUUCGCGGGcGCCCcgaGCCGCuGCc -3'
miRNA:   3'- auauuuAGGCGUCU-CGGG---CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 92718 0.66 0.900266
Target:  5'- ------cUgGCAGAGCCuCGCgugcucgCGCAGCg -3'
miRNA:   3'- auauuuaGgCGUCUCGG-GCG-------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 88336 0.66 0.900922
Target:  5'- ------gCCGCGcGGGCCUgugcucgucuGCCGUAGCc -3'
miRNA:   3'- auauuuaGGCGU-CUCGGG----------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 102162 0.66 0.907352
Target:  5'- ------gCCGCccuGCCCGCCcCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 34768 0.66 0.900922
Target:  5'- -------gCGCGGcuGCgCGCCGCGGCc -3'
miRNA:   3'- auauuuagGCGUCu-CGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 77571 0.66 0.887328
Target:  5'- -----uUCCGCGgccgcgcgggccGAGCUCGCacgGCGGCa -3'
miRNA:   3'- auauuuAGGCGU------------CUCGGGCGg--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.