Results 81 - 100 of 627 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6491 | 3' | -55 | NC_001847.1 | + | 101370 | 0.66 | 0.900922 |
Target: 5'- ------cCCGCGaAGCCCugcaGCgGCAGCa -3' miRNA: 3'- auauuuaGGCGUcUCGGG----CGgCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 15529 | 0.66 | 0.900922 |
Target: 5'- --gGGAgCCGCGGGcuGCUggCGCCGguGCg -3' miRNA: 3'- auaUUUaGGCGUCU--CGG--GCGGCguCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 3223 | 0.66 | 0.900922 |
Target: 5'- cGUGccUCCGCG----CCGCCGCGGCu -3' miRNA: 3'- aUAUuuAGGCGUcucgGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 117354 | 0.66 | 0.900922 |
Target: 5'- ------cCCGCuGGGGCCCGUCcugaaccuaGCGGCc -3' miRNA: 3'- auauuuaGGCG-UCUCGGGCGG---------CGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 74662 | 0.66 | 0.900922 |
Target: 5'- -----cUgCGCcuGGAGCCggccgaGCCGCGGCa -3' miRNA: 3'- auauuuAgGCG--UCUCGGg-----CGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 102162 | 0.66 | 0.907352 |
Target: 5'- ------gCCGCccuGCCCGCCcCGGCg -3' miRNA: 3'- auauuuaGGCGucuCGGGCGGcGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 82224 | 0.66 | 0.907352 |
Target: 5'- -----cUUCGCGGGcGCCCcgaGCCGCuGCc -3' miRNA: 3'- auauuuAGGCGUCU-CGGG---CGGCGuCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 75444 | 0.66 | 0.907352 |
Target: 5'- ------aCCGCGGAGUCCugGCUGCuguuGCc -3' miRNA: 3'- auauuuaGGCGUCUCGGG--CGGCGu---CG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 106019 | 0.66 | 0.907352 |
Target: 5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3' miRNA: 3'- auauUUAGGCGucUCGGGCGgCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 106053 | 0.66 | 0.900922 |
Target: 5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3' miRNA: 3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 88336 | 0.66 | 0.900922 |
Target: 5'- ------gCCGCGcGGGCCUgugcucgucuGCCGUAGCc -3' miRNA: 3'- auauuuaGGCGU-CUCGGG----------CGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 18456 | 0.66 | 0.894246 |
Target: 5'- -------gUGCGGuGCCgCGCCcGCAGCg -3' miRNA: 3'- auauuuagGCGUCuCGG-GCGG-CGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 101415 | 0.66 | 0.894246 |
Target: 5'- --gGGGUCuCGUcu--CCCGCCGCGGCu -3' miRNA: 3'- auaUUUAG-GCGucucGGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 92718 | 0.66 | 0.900266 |
Target: 5'- ------cUgGCAGAGCCuCGCgugcucgCGCAGCg -3' miRNA: 3'- auauuuaGgCGUCUCGG-GCG-------GCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 107194 | 0.66 | 0.894246 |
Target: 5'- ------aCCGC-GAGCgcgcgCGCCGCGGCc -3' miRNA: 3'- auauuuaGGCGuCUCGg----GCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 92398 | 0.66 | 0.894246 |
Target: 5'- -cUGGAUCUGCuGuccGcCCCGCCGCccGCg -3' miRNA: 3'- auAUUUAGGCGuCu--C-GGGCGGCGu-CG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 7287 | 0.66 | 0.894246 |
Target: 5'- -----cUCCGCAguacGAGCCgcUGgCGCGGCg -3' miRNA: 3'- auauuuAGGCGU----CUCGG--GCgGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 82612 | 0.66 | 0.887328 |
Target: 5'- cUGUGcg-CCGCgcgcuGGAGCuuGCCGC-GCu -3' miRNA: 3'- -AUAUuuaGGCG-----UCUCGggCGGCGuCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 21499 | 0.66 | 0.900922 |
Target: 5'- --gGAAUuuGCcGGGCgCGCCuCGGCg -3' miRNA: 3'- auaUUUAggCGuCUCGgGCGGcGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 81247 | 0.66 | 0.887328 |
Target: 5'- ------gCCagGCuGGGCCUGCCGCuGCu -3' miRNA: 3'- auauuuaGG--CGuCUCGGGCGGCGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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