Results 101 - 120 of 627 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6491 | 3' | -55 | NC_001847.1 | + | 101370 | 0.66 | 0.900922 |
Target: 5'- ------cCCGCGaAGCCCugcaGCgGCAGCa -3' miRNA: 3'- auauuuaGGCGUcUCGGG----CGgCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 51973 | 0.66 | 0.907352 |
Target: 5'- ----cGUCCGCc-AGCCCGUCG-GGCg -3' miRNA: 3'- auauuUAGGCGucUCGGGCGGCgUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 38076 | 0.66 | 0.907352 |
Target: 5'- -------gCGCGGcGgCCGCCGCGGUc -3' miRNA: 3'- auauuuagGCGUCuCgGGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 51909 | 0.66 | 0.907352 |
Target: 5'- ------gCCGCc--GCCCcgGCCGCGGCg -3' miRNA: 3'- auauuuaGGCGucuCGGG--CGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 58262 | 0.66 | 0.907352 |
Target: 5'- -----cUCCGuCAGgcaGGCCUccaugugcucgGCCGCGGCg -3' miRNA: 3'- auauuuAGGC-GUC---UCGGG-----------CGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 55311 | 0.66 | 0.907352 |
Target: 5'- --aGAcgCCGCGGucGCCCacuuCCgGCAGCg -3' miRNA: 3'- auaUUuaGGCGUCu-CGGGc---GG-CGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 51863 | 0.66 | 0.906721 |
Target: 5'- --gGAggCCGCAGGugugcgccucugcGCCCGCCccGCcGCg -3' miRNA: 3'- auaUUuaGGCGUCU-------------CGGGCGG--CGuCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 3206 | 0.66 | 0.907352 |
Target: 5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3' miRNA: 3'- auauUUAGGCGucUCGGGCGgCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 70697 | 0.66 | 0.893566 |
Target: 5'- ------gCCGCGGGcggcggcgggggcGCCCGCgGCgAGCg -3' miRNA: 3'- auauuuaGGCGUCU-------------CGGGCGgCG-UCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 12560 | 0.66 | 0.907352 |
Target: 5'- --cAGGUgCGCAacGGGCgCCGCguaCGCGGCg -3' miRNA: 3'- auaUUUAgGCGU--CUCG-GGCG---GCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 117354 | 0.66 | 0.900922 |
Target: 5'- ------cCCGCuGGGGCCCGUCcugaaccuaGCGGCc -3' miRNA: 3'- auauuuaGGCG-UCUCGGGCGG---------CGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 21499 | 0.66 | 0.900922 |
Target: 5'- --gGAAUuuGCcGGGCgCGCCuCGGCg -3' miRNA: 3'- auaUUUAggCGuCUCGgGCGGcGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 55575 | 0.66 | 0.907352 |
Target: 5'- --aGAggCCGC-GAGCCCGgCGCcccccGCg -3' miRNA: 3'- auaUUuaGGCGuCUCGGGCgGCGu----CG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 74587 | 0.66 | 0.907352 |
Target: 5'- -------aCGCAGGGCCUGCagGaCGGCg -3' miRNA: 3'- auauuuagGCGUCUCGGGCGg-C-GUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 67702 | 0.66 | 0.907352 |
Target: 5'- -----cUCgGCGaggugcucGAGCgCGCCGUAGCa -3' miRNA: 3'- auauuuAGgCGU--------CUCGgGCGGCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 102162 | 0.66 | 0.907352 |
Target: 5'- ------gCCGCccuGCCCGCCcCGGCg -3' miRNA: 3'- auauuuaGGCGucuCGGGCGGcGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 104438 | 0.66 | 0.900922 |
Target: 5'- ------gCCGCGGcAGCaCCGCgGCGcGCa -3' miRNA: 3'- auauuuaGGCGUC-UCG-GGCGgCGU-CG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 44317 | 0.66 | 0.894246 |
Target: 5'- --cAGcgCCagaGCGGuGCCCGCCG-GGCg -3' miRNA: 3'- auaUUuaGG---CGUCuCGGGCGGCgUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 47894 | 0.66 | 0.894246 |
Target: 5'- --gAAAgCgGCAGAuCCCGCgGCGGUg -3' miRNA: 3'- auaUUUaGgCGUCUcGGGCGgCGUCG- -5' |
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6491 | 3' | -55 | NC_001847.1 | + | 33939 | 0.66 | 0.894246 |
Target: 5'- ----cGUgUGCAG-GCCCGCCGgAGa -3' miRNA: 3'- auauuUAgGCGUCuCGGGCGGCgUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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