miRNA display CGI


Results 121 - 140 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 54114 0.66 0.894246
Target:  5'- ------cCCGC--AGUCCGCgGCGGCg -3'
miRNA:   3'- auauuuaGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 123445 0.66 0.883062
Target:  5'- aAUGGGUuuGCcGGGCuuggcccggcgacggCCGCCGCGGg -3'
miRNA:   3'- aUAUUUAggCGuCUCG---------------GGCGGCGUCg -5'
6491 3' -55 NC_001847.1 + 81300 0.66 0.894246
Target:  5'- --cAGcgCCGCc-AGCgCCGCCGCuGCc -3'
miRNA:   3'- auaUUuaGGCGucUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 134179 0.66 0.900922
Target:  5'- -------gCGCauAGAcGCCCGgCGCAGCg -3'
miRNA:   3'- auauuuagGCG--UCU-CGGGCgGCGUCG- -5'
6491 3' -55 NC_001847.1 + 30922 0.66 0.896946
Target:  5'- ------aCCGCGGuGCCCGugccccgcgcgaguaCCgGCAGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGGC---------------GG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 57915 0.66 0.894246
Target:  5'- ------aCCGCGccaaguccGGGCCCGgcggcCCGCGGCu -3'
miRNA:   3'- auauuuaGGCGU--------CUCGGGC-----GGCGUCG- -5'
6491 3' -55 NC_001847.1 + 127903 0.66 0.887328
Target:  5'- ------cCCGCAcAGCcacccgaccagCCGCUGCAGCg -3'
miRNA:   3'- auauuuaGGCGUcUCG-----------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 37302 0.66 0.887328
Target:  5'- gUAUAAggCgCGCGcAGCCCGCgCGCgccgAGCa -3'
miRNA:   3'- -AUAUUuaG-GCGUcUCGGGCG-GCG----UCG- -5'
6491 3' -55 NC_001847.1 + 36019 0.66 0.887328
Target:  5'- --aGAAUCCaucuugGCuGAGCggUGCCGCGGCa -3'
miRNA:   3'- auaUUUAGG------CGuCUCGg-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 70817 0.66 0.887328
Target:  5'- --gGGAUCCGCcGAGCgCCGaguccCCGUaaGGCg -3'
miRNA:   3'- auaUUUAGGCGuCUCG-GGC-----GGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 84477 0.66 0.887328
Target:  5'- ------cCCGCAGGGCaCGUCGCccuccAGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGgGCGGCG-----UCG- -5'
6491 3' -55 NC_001847.1 + 120570 0.66 0.887328
Target:  5'- -uUAGAgagCCGCGc-GCCCGCCagcacccgcgcuGCGGCg -3'
miRNA:   3'- auAUUUa--GGCGUcuCGGGCGG------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 86652 0.66 0.887328
Target:  5'- ------gCCGCcccGGAGCgCGCCGC-GCu -3'
miRNA:   3'- auauuuaGGCG---UCUCGgGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 93607 0.66 0.887328
Target:  5'- --aAGAUCa--AG-GCCCGCgGCGGCa -3'
miRNA:   3'- auaUUUAGgcgUCuCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 18690 0.66 0.887328
Target:  5'- ------cCCGCAGcacGGCCCGCgucacCGcCAGCg -3'
miRNA:   3'- auauuuaGGCGUC---UCGGGCG-----GC-GUCG- -5'
6491 3' -55 NC_001847.1 + 128013 0.66 0.886623
Target:  5'- ---uGAUgCUGCucacgggccaggaGGAGCCCgGCCGUGGCg -3'
miRNA:   3'- auauUUA-GGCG-------------UCUCGGG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 3240 0.66 0.900922
Target:  5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 45147 0.66 0.887328
Target:  5'- -----uUCUGCGGGGugcagcCCCGCggcgCGCAGCa -3'
miRNA:   3'- auauuuAGGCGUCUC------GGGCG----GCGUCG- -5'
6491 3' -55 NC_001847.1 + 125083 0.66 0.887328
Target:  5'- -------gCGCuGGGCCCGC-GCGGCc -3'
miRNA:   3'- auauuuagGCGuCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 120217 0.66 0.894246
Target:  5'- ------gCCaGCGGuAGgCCGUCGCGGCg -3'
miRNA:   3'- auauuuaGG-CGUC-UCgGGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.