miRNA display CGI


Results 41 - 60 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 122683 0.75 0.433897
Target:  5'- --gGAAgCCGCGGAgGCuCCGCCGCGcGCg -3'
miRNA:   3'- auaUUUaGGCGUCU-CG-GGCGGCGU-CG- -5'
6491 3' -55 NC_001847.1 + 132681 0.74 0.498026
Target:  5'- --gGGcgCCGCcgcccgcucgaucgGGAGCUCGCUGCGGCu -3'
miRNA:   3'- auaUUuaGGCG--------------UCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 116706 0.74 0.491118
Target:  5'- ------aCCGCAcGGCUgGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGUcUCGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 980 0.74 0.462042
Target:  5'- ------gCCgGCGGGGCuuCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGG-CGUCUCG--GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 48779 0.74 0.462042
Target:  5'- ---cAAUCCGCGG-GCaCCGCCGCaacAGCc -3'
miRNA:   3'- auauUUAGGCGUCuCG-GGCGGCG---UCG- -5'
6491 3' -55 NC_001847.1 + 100997 0.74 0.491118
Target:  5'- -----cUCgCGCAGcgcGCUCGCCGCGGCg -3'
miRNA:   3'- auauuuAG-GCGUCu--CGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 103263 0.74 0.471636
Target:  5'- ----cAUCCGCGcgacGGGCuCCGCCgGCAGCa -3'
miRNA:   3'- auauuUAGGCGU----CUCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 46339 0.74 0.491118
Target:  5'- ------cCCGCGGGGCCgCGUCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGUCUCGG-GCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 101033 0.74 0.481329
Target:  5'- --aGGcgCCGCAG-GCuCCGCCGCcGCg -3'
miRNA:   3'- auaUUuaGGCGUCuCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 91239 0.74 0.500999
Target:  5'- --gGGGUCCGCcuGcAGCUCGCaCGCGGCg -3'
miRNA:   3'- auaUUUAGGCGu-C-UCGGGCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 28632 0.74 0.462042
Target:  5'- ------gCCGCGGGGCCCGCgGCcGUg -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGgCGuCG- -5'
6491 3' -55 NC_001847.1 + 41022 0.74 0.500999
Target:  5'- ----cGUCCuGCAacGGGCgCGCCGCGGCg -3'
miRNA:   3'- auauuUAGG-CGU--CUCGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 73769 0.74 0.500999
Target:  5'- aGUAccuGAUCCGCGacGCCuCGCCGguGCg -3'
miRNA:   3'- aUAU---UUAGGCGUcuCGG-GCGGCguCG- -5'
6491 3' -55 NC_001847.1 + 132048 0.74 0.481329
Target:  5'- ------gCCGCGGccuGCCgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCu--CGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 68454 0.74 0.471636
Target:  5'- --gAGGUCCGCgcccgcggccGGGGcCCCGCCGCgcgGGCg -3'
miRNA:   3'- auaUUUAGGCG----------UCUC-GGGCGGCG---UCG- -5'
6491 3' -55 NC_001847.1 + 27147 0.74 0.462042
Target:  5'- ----cGUCCGgGGGGCgCaGCCGCGGCg -3'
miRNA:   3'- auauuUAGGCgUCUCGgG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 51377 0.74 0.471636
Target:  5'- gGUGAcgCuCGCGGAGgCCGCgguCGCGGCg -3'
miRNA:   3'- aUAUUuaG-GCGUCUCgGGCG---GCGUCG- -5'
6491 3' -55 NC_001847.1 + 109755 0.74 0.452552
Target:  5'- aGUGcuUCCGCGGucccccuccGCCCGCCGCcGCc -3'
miRNA:   3'- aUAUuuAGGCGUCu--------CGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 29235 0.74 0.481329
Target:  5'- ------gCCGCGGccuGCCgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCu--CGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 121925 0.74 0.491118
Target:  5'- ------aUCGCGGAGCUCGCCgaGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGG--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.