miRNA display CGI


Results 61 - 80 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 980 0.74 0.462042
Target:  5'- ------gCCgGCGGGGCuuCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGG-CGUCUCG--GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 103263 0.74 0.471636
Target:  5'- ----cAUCCGCGcgacGGGCuCCGCCgGCAGCa -3'
miRNA:   3'- auauuUAGGCGU----CUCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 68454 0.74 0.471636
Target:  5'- --gAGGUCCGCgcccgcggccGGGGcCCCGCCGCgcgGGCg -3'
miRNA:   3'- auaUUUAGGCG----------UCUC-GGGCGGCG---UCG- -5'
6491 3' -55 NC_001847.1 + 90457 0.73 0.541335
Target:  5'- ---cGGUCCGCGcGGCCCauCCGCGGCu -3'
miRNA:   3'- auauUUAGGCGUcUCGGGc-GGCGUCG- -5'
6491 3' -55 NC_001847.1 + 43625 0.73 0.521015
Target:  5'- --cGAcgCUGgAGAGCCUGCUGCAGg -3'
miRNA:   3'- auaUUuaGGCgUCUCGGGCGGCGUCg -5'
6491 3' -55 NC_001847.1 + 47696 0.73 0.551595
Target:  5'- ------gCCGCGGGGCCguugagCGCgCGCAGCa -3'
miRNA:   3'- auauuuaGGCGUCUCGG------GCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 28961 0.73 0.510966
Target:  5'- -----cUCCuGCAGAGCCUGCgGCGcGCg -3'
miRNA:   3'- auauuuAGG-CGUCUCGGGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 49415 0.73 0.551595
Target:  5'- -----cUCCGCGcAGCCUGCCGCcguGCa -3'
miRNA:   3'- auauuuAGGCGUcUCGGGCGGCGu--CG- -5'
6491 3' -55 NC_001847.1 + 30256 0.73 0.510966
Target:  5'- ------cCCGCGGGGCgcucgccgccaCCGCUGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCG-----------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 133069 0.73 0.510966
Target:  5'- ------cCCGCGGGGCgcucgccgccaCCGCUGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCG-----------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 31881 0.73 0.521015
Target:  5'- ------gCCgGCGGAGCCCGUCGC-GCg -3'
miRNA:   3'- auauuuaGG-CGUCUCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 75776 0.73 0.521015
Target:  5'- gGUGAAcacggCCGCGG-GCUCGgCGCGGCg -3'
miRNA:   3'- aUAUUUa----GGCGUCuCGGGCgGCGUCG- -5'
6491 3' -55 NC_001847.1 + 34455 0.73 0.531139
Target:  5'- --cGAggCCGCGGuGgCCGCCgGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCuCgGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 40169 0.73 0.531139
Target:  5'- --cAAAgCCGCGGGGgCUGCgCGCGGCg -3'
miRNA:   3'- auaUUUaGGCGUCUCgGGCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 104997 0.73 0.531139
Target:  5'- ---uGGUCCGC-GAGCCgCGCCGCgaccucggGGCg -3'
miRNA:   3'- auauUUAGGCGuCUCGG-GCGGCG--------UCG- -5'
6491 3' -55 NC_001847.1 + 103702 0.73 0.541335
Target:  5'- ------cCCGCGccGGGgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGU--CUCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 91759 0.73 0.521015
Target:  5'- cAUcgGUCCGCGGGcGCuCCGUCgGCGGCg -3'
miRNA:   3'- aUAuuUAGGCGUCU-CG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 95324 0.73 0.510966
Target:  5'- --aGGAagCGCucGGGCCCGCCGCGGa -3'
miRNA:   3'- auaUUUagGCGu-CUCGGGCGGCGUCg -5'
6491 3' -55 NC_001847.1 + 889 0.73 0.541335
Target:  5'- ------cCCGCGccGGGgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGU--CUCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 2184 0.73 0.531139
Target:  5'- ---uGGUCCGC-GAGCCgCGCCGCgaccucggGGCg -3'
miRNA:   3'- auauUUAGGCGuCUCGG-GCGGCG--------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.