miRNA display CGI


Results 81 - 100 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 43625 0.73 0.521015
Target:  5'- --cGAcgCUGgAGAGCCUGCUGCAGg -3'
miRNA:   3'- auaUUuaGGCgUCUCGGGCGGCGUCg -5'
6491 3' -55 NC_001847.1 + 30256 0.73 0.510966
Target:  5'- ------cCCGCGGGGCgcucgccgccaCCGCUGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCG-----------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 31223 0.72 0.582697
Target:  5'- --gGAggCCGCGGcGGCgCCGCCcGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUC-UCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 79630 0.72 0.582697
Target:  5'- ------cCCGCGGcgGGCgCCGCCaGCAGCa -3'
miRNA:   3'- auauuuaGGCGUC--UCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 43512 0.72 0.572282
Target:  5'- --aAGAgCCGCAGccgcAGCCgcaGCCGCAGCc -3'
miRNA:   3'- auaUUUaGGCGUC----UCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 43464 0.72 0.572282
Target:  5'- --gGGAgCCGCAGccgcAGCCgcaGCCGCAGCc -3'
miRNA:   3'- auaUUUaGGCGUC----UCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 98126 0.72 0.571244
Target:  5'- --cAGGUCCGCGGGcgucagcucgagcGCgCCGCCGCcGCu -3'
miRNA:   3'- auaUUUAGGCGUCU-------------CG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 104846 0.72 0.558812
Target:  5'- --gGGGUCCGCgaucugcgacauccAGGccacGCgCCGCCGCAGCg -3'
miRNA:   3'- auaUUUAGGCG--------------UCU----CG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 120337 0.72 0.582697
Target:  5'- --gGGcgCCGCGcAGCuCCGCCGCuGCg -3'
miRNA:   3'- auaUUuaGGCGUcUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 93066 0.72 0.593149
Target:  5'- ------aCCGCGaGGCCgaugCGCCGCAGCg -3'
miRNA:   3'- auauuuaGGCGUcUCGG----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 36353 0.72 0.593149
Target:  5'- ------gCCGCGGcgcgcgcacgcGGCgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC-----------UCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 120673 0.72 0.614136
Target:  5'- -----cUUCGguGAGCCCggagacccagagGCCGCGGCc -3'
miRNA:   3'- auauuuAGGCguCUCGGG------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 96386 0.72 0.614136
Target:  5'- -----cUCCaGCAcGGGCCCGCCGCcacGCu -3'
miRNA:   3'- auauuuAGG-CGU-CUCGGGCGGCGu--CG- -5'
6491 3' -55 NC_001847.1 + 9618 0.72 0.603632
Target:  5'- ------aCCGUAGcugcGCCCGCCGCcGCg -3'
miRNA:   3'- auauuuaGGCGUCu---CGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 131192 0.72 0.603632
Target:  5'- ------gCCGcCGGAGacggcgcccccCCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGC-GUCUC-----------GGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 64442 0.72 0.602582
Target:  5'- ------gCCGCGGGcgcccccgccgccGCCCGCgGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCU-------------CGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 50776 0.72 0.593149
Target:  5'- -------aCGCGGAGCCCGCU-CGGCg -3'
miRNA:   3'- auauuuagGCGUCUCGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 78596 0.72 0.592102
Target:  5'- ------gCCGCgcucccuGGAGCugCCGCCGCGGCa -3'
miRNA:   3'- auauuuaGGCG-------UCUCG--GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 124401 0.72 0.586874
Target:  5'- --gGGggCCGCGGGGcCCCGCCccccuaaacucgcugGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCUC-GGGCGG---------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 134036 0.72 0.582697
Target:  5'- --gGAggCCGCGGcGGCgCCGCCcGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUC-UCG-GGCGG-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.