miRNA display CGI


Results 101 - 120 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 64442 0.72 0.602582
Target:  5'- ------gCCGCGGGcgcccccgccgccGCCCGCgGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCU-------------CGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 131192 0.72 0.603632
Target:  5'- ------gCCGcCGGAGacggcgcccccCCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGC-GUCUC-----------GGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 9618 0.72 0.603632
Target:  5'- ------aCCGUAGcugcGCCCGCCGCcGCg -3'
miRNA:   3'- auauuuaGGCGUCu---CGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 96386 0.72 0.614136
Target:  5'- -----cUCCaGCAcGGGCCCGCCGCcacGCu -3'
miRNA:   3'- auauuuAGG-CGU-CUCGGGCGGCGu--CG- -5'
6491 3' -55 NC_001847.1 + 120673 0.72 0.614136
Target:  5'- -----cUUCGguGAGCCCggagacccagagGCCGCGGCc -3'
miRNA:   3'- auauuuAGGCguCUCGGG------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 73134 0.72 0.582697
Target:  5'- cAUAcggCCGCAGGGCCCcgcGCCGCucuucgGGCc -3'
miRNA:   3'- aUAUuuaGGCGUCUCGGG---CGGCG------UCG- -5'
6491 3' -55 NC_001847.1 + 82858 0.72 0.618343
Target:  5'- cGUAcGUCCgGCAcgugcucgcccgugcGGGCgCGCCGCAGCc -3'
miRNA:   3'- aUAUuUAGG-CGU---------------CUCGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 36353 0.72 0.593149
Target:  5'- ------gCCGCGGcgcgcgcacgcGGCgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC-----------UCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 69865 0.72 0.614136
Target:  5'- ---cGAUUaCGUAG-GCCCGCCGCuGCg -3'
miRNA:   3'- auauUUAG-GCGUCuCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 131202 0.72 0.614136
Target:  5'- cUGUGGGUCgCGCucgccGCCCGCUGcCAGCg -3'
miRNA:   3'- -AUAUUUAG-GCGucu--CGGGCGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 120337 0.72 0.582697
Target:  5'- --gGGcgCCGCGcAGCuCCGCCGCuGCg -3'
miRNA:   3'- auaUUuaGGCGUcUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 21588 0.72 0.586874
Target:  5'- --gGGggCCGCGGGGcCCCGCCccccuaaacucgcugGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCUC-GGGCGG---------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 36112 0.72 0.593149
Target:  5'- ----uAUCCGCGGGcgguGCUCGCCGCccgaGGCa -3'
miRNA:   3'- auauuUAGGCGUCU----CGGGCGGCG----UCG- -5'
6491 3' -55 NC_001847.1 + 41521 0.72 0.593149
Target:  5'- ----cGUCCGCGGccgcGCCgGCCGgAGCa -3'
miRNA:   3'- auauuUAGGCGUCu---CGGgCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 78596 0.72 0.592102
Target:  5'- ------gCCGCgcucccuGGAGCugCCGCCGCGGCa -3'
miRNA:   3'- auauuuaGGCG-------UCUCG--GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 78330 0.72 0.603632
Target:  5'- ------gCCGCGG-GCCCggcuugggcGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGG---------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 119840 0.72 0.603632
Target:  5'- --cGGGUCgCGCAc-GCCCGCgCGCAGCc -3'
miRNA:   3'- auaUUUAG-GCGUcuCGGGCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 34495 0.72 0.614136
Target:  5'- ------gCCGCAGcagcgcGGCCCuggcGCCGCAGCc -3'
miRNA:   3'- auauuuaGGCGUC------UCGGG----CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 103225 0.72 0.614136
Target:  5'- ------gCCGCGcGAGCCgCgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGU-CUCGG-G-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 68159 0.71 0.624655
Target:  5'- --cGGcgCCGCGccgcAGCCCGCCucuGCAGCg -3'
miRNA:   3'- auaUUuaGGCGUc---UCGGGCGG---CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.