miRNA display CGI


Results 81 - 100 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 47696 0.73 0.551595
Target:  5'- ------gCCGCGGGGCCguugagCGCgCGCAGCa -3'
miRNA:   3'- auauuuaGGCGUCUCGG------GCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 49415 0.73 0.551595
Target:  5'- -----cUCCGCGcAGCCUGCCGCcguGCa -3'
miRNA:   3'- auauuuAGGCGUcUCGGGCGGCGu--CG- -5'
6491 3' -55 NC_001847.1 + 104846 0.72 0.558812
Target:  5'- --gGGGUCCGCgaucugcgacauccAGGccacGCgCCGCCGCAGCg -3'
miRNA:   3'- auaUUUAGGCG--------------UCU----CG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 2033 0.72 0.558812
Target:  5'- --gGGGUCCGCgaucugcgacauccAGGccacGCgCCGCCGCAGCg -3'
miRNA:   3'- auaUUUAGGCG--------------UCU----CG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 24063 0.72 0.561913
Target:  5'- -----cUCgCGCAGccgggcccaGGCCCGCgGCAGCg -3'
miRNA:   3'- auauuuAG-GCGUC---------UCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 54874 0.72 0.561913
Target:  5'- ------aCCGCuucaugaaGGAGCCCuGCUGCGGCa -3'
miRNA:   3'- auauuuaGGCG--------UCUCGGG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 98126 0.72 0.571244
Target:  5'- --cAGGUCCGCGGGcgucagcucgagcGCgCCGCCGCcGCu -3'
miRNA:   3'- auaUUUAGGCGUCU-------------CG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 43512 0.72 0.572282
Target:  5'- --aAGAgCCGCAGccgcAGCCgcaGCCGCAGCc -3'
miRNA:   3'- auaUUUaGGCGUC----UCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 101380 0.72 0.572282
Target:  5'- ------gCCGCGGGGgCUGCCcGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCgGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 83012 0.72 0.572282
Target:  5'- cGUcgGUCCGCuGGGGCgCCGCCggcccGCGGCc -3'
miRNA:   3'- aUAuuUAGGCG-UCUCG-GGCGG-----CGUCG- -5'
6491 3' -55 NC_001847.1 + 43464 0.72 0.572282
Target:  5'- --gGGAgCCGCAGccgcAGCCgcaGCCGCAGCc -3'
miRNA:   3'- auaUUUaGGCGUC----UCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 120337 0.72 0.582697
Target:  5'- --gGGcgCCGCGcAGCuCCGCCGCuGCg -3'
miRNA:   3'- auaUUuaGGCGUcUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 84626 0.72 0.582697
Target:  5'- -----uUCgaGCGGGGCCaUGCCGCGGCu -3'
miRNA:   3'- auauuuAGg-CGUCUCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 79630 0.72 0.582697
Target:  5'- ------cCCGCGGcgGGCgCCGCCaGCAGCa -3'
miRNA:   3'- auauuuaGGCGUC--UCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 134036 0.72 0.582697
Target:  5'- --gGAggCCGCGGcGGCgCCGCCcGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUC-UCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 31223 0.72 0.582697
Target:  5'- --gGAggCCGCGGcGGCgCCGCCcGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUC-UCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 12074 0.72 0.582697
Target:  5'- --cGAggCCGCGGAGCgCCGCggguccggcgccCGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUCUCG-GGCG------------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 73134 0.72 0.582697
Target:  5'- cAUAcggCCGCAGGGCCCcgcGCCGCucuucgGGCc -3'
miRNA:   3'- aUAUuuaGGCGUCUCGGG---CGGCG------UCG- -5'
6491 3' -55 NC_001847.1 + 124401 0.72 0.586874
Target:  5'- --gGGggCCGCGGGGcCCCGCCccccuaaacucgcugGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCUC-GGGCGG---------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 21588 0.72 0.586874
Target:  5'- --gGGggCCGCGGGGcCCCGCCccccuaaacucgcugGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCUC-GGGCGG---------------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.