miRNA display CGI


Results 81 - 100 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 99900 0.66 0.894246
Target:  5'- -----cUCCGCcgcGcGCCCGCCggccgccuGCAGCa -3'
miRNA:   3'- auauuuAGGCGu--CuCGGGCGG--------CGUCG- -5'
6491 3' -55 NC_001847.1 + 57915 0.66 0.894246
Target:  5'- ------aCCGCGccaaguccGGGCCCGgcggcCCGCGGCu -3'
miRNA:   3'- auauuuaGGCGU--------CUCGGGC-----GGCGUCG- -5'
6491 3' -55 NC_001847.1 + 47894 0.66 0.894246
Target:  5'- --gAAAgCgGCAGAuCCCGCgGCGGUg -3'
miRNA:   3'- auaUUUaGgCGUCUcGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 117038 0.66 0.894246
Target:  5'- ------gCCGCGGAG-CUGCUGgAGCa -3'
miRNA:   3'- auauuuaGGCGUCUCgGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 7287 0.66 0.894246
Target:  5'- -----cUCCGCAguacGAGCCgcUGgCGCGGCg -3'
miRNA:   3'- auauuuAGGCGU----CUCGG--GCgGCGUCG- -5'
6491 3' -55 NC_001847.1 + 6679 0.66 0.894246
Target:  5'- -cUAGG-CCGCGGcGGCCgGCCG-GGCg -3'
miRNA:   3'- auAUUUaGGCGUC-UCGGgCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 18456 0.66 0.894246
Target:  5'- -------gUGCGGuGCCgCGCCcGCAGCg -3'
miRNA:   3'- auauuuagGCGUCuCGG-GCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 44317 0.66 0.894246
Target:  5'- --cAGcgCCagaGCGGuGCCCGCCG-GGCg -3'
miRNA:   3'- auaUUuaGG---CGUCuCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 107194 0.66 0.894246
Target:  5'- ------aCCGC-GAGCgcgcgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGuCUCGg----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 118693 0.66 0.894246
Target:  5'- ------gCCGCGG-GCCuCGUCGUAGUu -3'
miRNA:   3'- auauuuaGGCGUCuCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 74621 0.66 0.894246
Target:  5'- gUGUGAGcggugCCGCGGccauaaaaaGGCCCGCCgGCccGCg -3'
miRNA:   3'- -AUAUUUa----GGCGUC---------UCGGGCGG-CGu-CG- -5'
6491 3' -55 NC_001847.1 + 55151 0.66 0.894246
Target:  5'- -------gCGUAGAGCCCcCCaGCGGCc -3'
miRNA:   3'- auauuuagGCGUCUCGGGcGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 101415 0.66 0.894246
Target:  5'- --gGGGUCuCGUcu--CCCGCCGCGGCu -3'
miRNA:   3'- auaUUUAG-GCGucucGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 39512 0.66 0.894246
Target:  5'- ------cCCGCgccAGAgcgGCCCGCCaCAGCg -3'
miRNA:   3'- auauuuaGGCG---UCU---CGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 87673 0.66 0.893566
Target:  5'- ------gCCGCAuGGCCCgggcgcuggggcuGCUGCGGCg -3'
miRNA:   3'- auauuuaGGCGUcUCGGG-------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 70697 0.66 0.893566
Target:  5'- ------gCCGCGGGcggcggcgggggcGCCCGCgGCgAGCg -3'
miRNA:   3'- auauuuaGGCGUCU-------------CGGGCGgCG-UCG- -5'
6491 3' -55 NC_001847.1 + 62192 0.66 0.893566
Target:  5'- ---cAAUCCGCGcgaagacGGGCUCGUcccagaagCGCAGCg -3'
miRNA:   3'- auauUUAGGCGU-------CUCGGGCG--------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 77571 0.66 0.887328
Target:  5'- -----uUCCGCGgccgcgcgggccGAGCUCGCacgGCGGCa -3'
miRNA:   3'- auauuuAGGCGU------------CUCGGGCGg--CGUCG- -5'
6491 3' -55 NC_001847.1 + 11967 0.66 0.887328
Target:  5'- gAUGGG-CgGCuGAGCgCCGCCGC-GCc -3'
miRNA:   3'- aUAUUUaGgCGuCUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 98161 0.66 0.887328
Target:  5'- --------aGCAGcAGCaCGCCGCGGCg -3'
miRNA:   3'- auauuuaggCGUC-UCGgGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.