miRNA display CGI


Results 81 - 100 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 18323 0.69 0.768384
Target:  5'- --cGAAUCaCGCGGAGCagCUGCCG-GGCg -3'
miRNA:   3'- auaUUUAG-GCGUCUCG--GGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 18421 0.68 0.7875
Target:  5'- -------gUGCAGGGCCuuggccacgugCGCCGCGGCc -3'
miRNA:   3'- auauuuagGCGUCUCGG-----------GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 18456 0.66 0.894246
Target:  5'- -------gUGCGGuGCCgCGCCcGCAGCg -3'
miRNA:   3'- auauuuagGCGUCuCGG-GCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 18609 0.7 0.728692
Target:  5'- ----cGUCCGCGGcgucGGCgCGCgCGUAGCg -3'
miRNA:   3'- auauuUAGGCGUC----UCGgGCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 18690 0.66 0.887328
Target:  5'- ------cCCGCAGcacGGCCCGCgucacCGcCAGCg -3'
miRNA:   3'- auauuuaGGCGUC---UCGGGCG-----GC-GUCG- -5'
6491 3' -55 NC_001847.1 + 18745 0.71 0.656214
Target:  5'- --cGGggCC-CAGAGCgccgCCGCCGCGGCu -3'
miRNA:   3'- auaUUuaGGcGUCUCG----GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 18917 0.7 0.727679
Target:  5'- --cAGAUCUuguagugGCAGgugucuuccAGCgCCGCCGCGGCg -3'
miRNA:   3'- auaUUUAGG-------CGUC---------UCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 18982 0.69 0.748755
Target:  5'- ------gCCGCGGcGCCCgcgGCCGcCAGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGG---CGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 19244 0.66 0.880172
Target:  5'- ------cCUGCGcGAGCCgGCCaaGCGGCg -3'
miRNA:   3'- auauuuaGGCGU-CUCGGgCGG--CGUCG- -5'
6491 3' -55 NC_001847.1 + 19317 1.11 0.00197
Target:  5'- gUAUAAAUCCGCAGAGCCCGCCGCAGCg -3'
miRNA:   3'- -AUAUUUAGGCGUCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 20893 0.67 0.849268
Target:  5'- --------gGCGGAcGCCC-CCGCAGCg -3'
miRNA:   3'- auauuuaggCGUCU-CGGGcGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 21499 0.66 0.900922
Target:  5'- --gGAAUuuGCcGGGCgCGCCuCGGCg -3'
miRNA:   3'- auaUUUAggCGuCUCGgGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 21588 0.72 0.586874
Target:  5'- --gGGggCCGCGGGGcCCCGCCccccuaaacucgcugGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCUC-GGGCGG---------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 21945 0.66 0.900922
Target:  5'- ------aCCGC--GGCUCGCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 22272 0.68 0.832541
Target:  5'- cGUGAGcgCCGUAGgcAGCgCCGCCGaGGCc -3'
miRNA:   3'- aUAUUUa-GGCGUC--UCG-GGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 22297 0.68 0.832541
Target:  5'- cGUGAcgaaCGCGGAGCCgGUggcgaUGCAGCg -3'
miRNA:   3'- aUAUUuag-GCGUCUCGGgCG-----GCGUCG- -5'
6491 3' -55 NC_001847.1 + 22376 0.7 0.697961
Target:  5'- ---cAGUCCucgggGCAGAaggcGCCCggGCCGCGGCg -3'
miRNA:   3'- auauUUAGG-----CGUCU----CGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 22419 0.68 0.832541
Target:  5'- ----cGUCCGCgggggcGGGGCCCGagaccaCGCGGUc -3'
miRNA:   3'- auauuUAGGCG------UCUCGGGCg-----GCGUCG- -5'
6491 3' -55 NC_001847.1 + 22582 0.68 0.806025
Target:  5'- --gGGcgCCccgggGCAGGGCCCGCC-CGGUc -3'
miRNA:   3'- auaUUuaGG-----CGUCUCGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 22935 0.67 0.865163
Target:  5'- uUGUGGGUgCGCAGguaGGCaUCGCCGCAa- -3'
miRNA:   3'- -AUAUUUAgGCGUC---UCG-GGCGGCGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.