miRNA display CGI


Results 101 - 120 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 23877 0.65 0.913534
Target:  5'- aGUGcuUUCGCAGcGCgCGCaucaGCGGCa -3'
miRNA:   3'- aUAUuuAGGCGUCuCGgGCGg---CGUCG- -5'
6491 3' -55 NC_001847.1 + 24063 0.72 0.561913
Target:  5'- -----cUCgCGCAGccgggcccaGGCCCGCgGCAGCg -3'
miRNA:   3'- auauuuAG-GCGUC---------UCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 24956 0.67 0.849268
Target:  5'- --gAGGUacaCGCAGAuGCCCGUCG-GGCg -3'
miRNA:   3'- auaUUUAg--GCGUCU-CGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 26514 0.69 0.757646
Target:  5'- -----uUCUGCAGcgucGCCCGCCGUcccccggAGCa -3'
miRNA:   3'- auauuuAGGCGUCu---CGGGCGGCG-------UCG- -5'
6491 3' -55 NC_001847.1 + 26686 0.69 0.738772
Target:  5'- -uUGAcgCCgGCGG-GCuCCaGCCGCAGCu -3'
miRNA:   3'- auAUUuaGG-CGUCuCG-GG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 26747 0.67 0.872781
Target:  5'- cGUGGG-CCGUAGAGCgCGggugCGCGGCc -3'
miRNA:   3'- aUAUUUaGGCGUCUCGgGCg---GCGUCG- -5'
6491 3' -55 NC_001847.1 + 27118 0.66 0.887328
Target:  5'- ------cCCGCc--GgCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 27147 0.74 0.462042
Target:  5'- ----cGUCCGgGGGGCgCaGCCGCGGCg -3'
miRNA:   3'- auauuUAGGCgUCUCGgG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 27245 0.7 0.718523
Target:  5'- --aAAGUCCGuCAGGGuaaCCUGCCGCgagAGCc -3'
miRNA:   3'- auaUUUAGGC-GUCUC---GGGCGGCG---UCG- -5'
6491 3' -55 NC_001847.1 + 27349 0.67 0.841005
Target:  5'- ------gCCGCGG---CCGCCGCAGCc -3'
miRNA:   3'- auauuuaGGCGUCucgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 27426 0.7 0.697961
Target:  5'- uUGUAGccCCGgGGuGCCCGCCcGCgAGCg -3'
miRNA:   3'- -AUAUUuaGGCgUCuCGGGCGG-CG-UCG- -5'
6491 3' -55 NC_001847.1 + 27435 0.68 0.796841
Target:  5'- gGUGucGUUCGCAGcggcgcgggGGCCCuGCCGCuGCc -3'
miRNA:   3'- aUAUu-UAGGCGUC---------UCGGG-CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 27498 0.66 0.880172
Target:  5'- ------gCgGCAGAgGCcucggccgCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGgCGUCU-CG--------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 27624 0.67 0.849268
Target:  5'- --cGAGUCCGCGGAccucgGCCCGaCGgGGg -3'
miRNA:   3'- auaUUUAGGCGUCU-----CGGGCgGCgUCg -5'
6491 3' -55 NC_001847.1 + 27888 0.69 0.758628
Target:  5'- --gGAcgUCGCGGAGUgCGCCGaGGCc -3'
miRNA:   3'- auaUUuaGGCGUCUCGgGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 27929 0.68 0.796841
Target:  5'- --cGGAggaCGCGGAcagGCCUggGCCGCGGCg -3'
miRNA:   3'- auaUUUag-GCGUCU---CGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 27977 0.69 0.768384
Target:  5'- gGUGGAggcggCCGCggccggggcGGAGgCgGCCGCGGCc -3'
miRNA:   3'- aUAUUUa----GGCG---------UCUCgGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 27983 0.8 0.219772
Target:  5'- cGUGGcgCCGCGcuGGGCCgCGCUGCAGCg -3'
miRNA:   3'- aUAUUuaGGCGU--CUCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 28163 0.67 0.872781
Target:  5'- --cGGGUCCGaggacagcGGGCCCGaggaCUGCAGCg -3'
miRNA:   3'- auaUUUAGGCgu------CUCGGGC----GGCGUCG- -5'
6491 3' -55 NC_001847.1 + 28379 0.72 0.603632
Target:  5'- ------gCCGcCGGAGacggcgcccccCCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGC-GUCUC-----------GGGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.