miRNA display CGI


Results 41 - 60 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 127049 0.7 0.677166
Target:  5'- -cUGGcgCCGCGucGCCgaucuCGCCGCGGCg -3'
miRNA:   3'- auAUUuaGGCGUcuCGG-----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 126855 0.68 0.796841
Target:  5'- ------cCCGgGGAGCCCuGCCGCuuugucuuGCg -3'
miRNA:   3'- auauuuaGGCgUCUCGGG-CGGCGu-------CG- -5'
6491 3' -55 NC_001847.1 + 126513 0.68 0.806025
Target:  5'- --cGAGUCCGCAGcGgCCGCUccccCGGCg -3'
miRNA:   3'- auaUUUAGGCGUCuCgGGCGGc---GUCG- -5'
6491 3' -55 NC_001847.1 + 125467 0.69 0.778011
Target:  5'- --cGGGUCgGCGGcAGCUCGCgGCGGg -3'
miRNA:   3'- auaUUUAGgCGUC-UCGGGCGgCGUCg -5'
6491 3' -55 NC_001847.1 + 125395 0.68 0.806025
Target:  5'- --gGGcgCCccgggGCAGGGCCCGCC-CGGUc -3'
miRNA:   3'- auaUUuaGG-----CGUCUCGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 125232 0.68 0.832541
Target:  5'- ----cGUCCGCgggggcGGGGCCCGagaccaCGCGGUc -3'
miRNA:   3'- auauuUAGGCG------UCUCGGGCg-----GCGUCG- -5'
6491 3' -55 NC_001847.1 + 125189 0.7 0.697961
Target:  5'- ---cAGUCCucgggGCAGAaggcGCCCggGCCGCGGCg -3'
miRNA:   3'- auauUUAGG-----CGUCU----CGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 125110 0.68 0.832541
Target:  5'- cGUGAcgaaCGCGGAGCCgGUggcgaUGCAGCg -3'
miRNA:   3'- aUAUUuag-GCGUCUCGGgCG-----GCGUCG- -5'
6491 3' -55 NC_001847.1 + 125083 0.66 0.887328
Target:  5'- -------gCGCuGGGCCCGC-GCGGCc -3'
miRNA:   3'- auauuuagGCGuCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 124813 0.69 0.738772
Target:  5'- aAUGGcgUCGUAcGGGUccaugguugCCGCCGCAGCa -3'
miRNA:   3'- aUAUUuaGGCGU-CUCG---------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 124630 0.68 0.796841
Target:  5'- ------aCCGCuccauGGCCCGCaGCAGCg -3'
miRNA:   3'- auauuuaGGCGuc---UCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 124401 0.72 0.586874
Target:  5'- --gGGggCCGCGGGGcCCCGCCccccuaaacucgcugGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCUC-GGGCGG---------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 124328 0.67 0.865163
Target:  5'- --cAGGUgCUGCAGcAGCgCGCgGCAGUa -3'
miRNA:   3'- auaUUUA-GGCGUC-UCGgGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 123486 0.68 0.823883
Target:  5'- -----cUCgGCuGGGgCCGCCGCAaGCg -3'
miRNA:   3'- auauuuAGgCGuCUCgGGCGGCGU-CG- -5'
6491 3' -55 NC_001847.1 + 123445 0.66 0.883062
Target:  5'- aAUGGGUuuGCcGGGCuuggcccggcgacggCCGCCGCGGg -3'
miRNA:   3'- aUAUUUAggCGuCUCG---------------GGCGGCGUCg -5'
6491 3' -55 NC_001847.1 + 123159 0.66 0.887328
Target:  5'- --cGGGUuuGCGcGAGCCC-CCGCcaacGGCa -3'
miRNA:   3'- auaUUUAggCGU-CUCGGGcGGCG----UCG- -5'
6491 3' -55 NC_001847.1 + 123051 0.68 0.796841
Target:  5'- aGUAcggCCGCGGGcGCCgGacCCGCGGCg -3'
miRNA:   3'- aUAUuuaGGCGUCU-CGGgC--GGCGUCG- -5'
6491 3' -55 NC_001847.1 + 122683 0.75 0.433897
Target:  5'- --gGAAgCCGCGGAgGCuCCGCCGCGcGCg -3'
miRNA:   3'- auaUUUaGGCGUCU-CG-GGCGGCGU-CG- -5'
6491 3' -55 NC_001847.1 + 121985 0.67 0.857324
Target:  5'- cGUGGcugCCaGCAGcccaaccGCCgGCCGCGGCa -3'
miRNA:   3'- aUAUUua-GG-CGUCu------CGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 121925 0.74 0.491118
Target:  5'- ------aUCGCGGAGCUCGCCgaGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGG--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.