miRNA display CGI


Results 61 - 80 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 121658 0.67 0.872781
Target:  5'- -----cUUCGCGGaAGgCCGCCGCuGUg -3'
miRNA:   3'- auauuuAGGCGUC-UCgGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 121203 0.69 0.767414
Target:  5'- -----uUgCGCGGGGCggcccccCUGCCGCGGCg -3'
miRNA:   3'- auauuuAgGCGUCUCG-------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 121192 0.65 0.913534
Target:  5'- ------cUCGCcacGGGCCgcaGCCGCAGCu -3'
miRNA:   3'- auauuuaGGCGu--CUCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 120673 0.72 0.614136
Target:  5'- -----cUUCGguGAGCCCggagacccagagGCCGCGGCc -3'
miRNA:   3'- auauuuAGGCguCUCGGG------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 120570 0.66 0.887328
Target:  5'- -uUAGAgagCCGCGc-GCCCGCCagcacccgcgcuGCGGCg -3'
miRNA:   3'- auAUUUa--GGCGUcuCGGGCGG------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 120337 0.72 0.582697
Target:  5'- --gGGcgCCGCGcAGCuCCGCCGCuGCg -3'
miRNA:   3'- auaUUuaGGCGUcUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 120217 0.66 0.894246
Target:  5'- ------gCCaGCGGuAGgCCGUCGCGGCg -3'
miRNA:   3'- auauuuaGG-CGUC-UCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 120190 0.69 0.748755
Target:  5'- gGUGGugcuggCCGCGcGAgcggcGCCCGCuCGCAGCc -3'
miRNA:   3'- aUAUUua----GGCGU-CU-----CGGGCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 120100 0.66 0.880172
Target:  5'- gAUGGcgCuCGCAcAGCUCGCCcgGCGGCc -3'
miRNA:   3'- aUAUUuaG-GCGUcUCGGGCGG--CGUCG- -5'
6491 3' -55 NC_001847.1 + 119840 0.72 0.603632
Target:  5'- --cGGGUCgCGCAc-GCCCGCgCGCAGCc -3'
miRNA:   3'- auaUUUAG-GCGUcuCGGGCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 119628 0.66 0.887328
Target:  5'- ------cCCGCGGcuCCCGCCG-AGCc -3'
miRNA:   3'- auauuuaGGCGUCucGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 118693 0.66 0.894246
Target:  5'- ------gCCGCGG-GCCuCGUCGUAGUu -3'
miRNA:   3'- auauuuaGGCGUCuCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 118496 0.67 0.849268
Target:  5'- cUGUAGG--CGCGGGGCCCcgacggcaaaGCCGCcGCg -3'
miRNA:   3'- -AUAUUUagGCGUCUCGGG----------CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 117559 0.67 0.865163
Target:  5'- -----uUCCGCGGGcCCCGCCcguGCuGCu -3'
miRNA:   3'- auauuuAGGCGUCUcGGGCGG---CGuCG- -5'
6491 3' -55 NC_001847.1 + 117354 0.66 0.900922
Target:  5'- ------cCCGCuGGGGCCCGUCcugaaccuaGCGGCc -3'
miRNA:   3'- auauuuaGGCG-UCUCGGGCGG---------CGUCG- -5'
6491 3' -55 NC_001847.1 + 117268 0.67 0.849268
Target:  5'- -----cUCUGCGGGG-CCGCCGUuuuggGGCg -3'
miRNA:   3'- auauuuAGGCGUCUCgGGCGGCG-----UCG- -5'
6491 3' -55 NC_001847.1 + 117038 0.66 0.894246
Target:  5'- ------gCCGCGGAG-CUGCUGgAGCa -3'
miRNA:   3'- auauuuaGGCGUCUCgGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 117031 0.66 0.880172
Target:  5'- ----uGUCUGCccggcgGGGGCUCGCCGaggaGGCg -3'
miRNA:   3'- auauuUAGGCG------UCUCGGGCGGCg---UCG- -5'
6491 3' -55 NC_001847.1 + 116968 0.77 0.316948
Target:  5'- ----cGUCCGCcauGGGCCCGCUGgGGCg -3'
miRNA:   3'- auauuUAGGCGu--CUCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 116931 0.66 0.887328
Target:  5'- --gAGAgCCGCAcAGCCCGuaCCGCuGCc -3'
miRNA:   3'- auaUUUaGGCGUcUCGGGC--GGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.