miRNA display CGI


Results 81 - 100 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 116706 0.74 0.491118
Target:  5'- ------aCCGCAcGGCUgGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGUcUCGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 116364 0.69 0.778011
Target:  5'- ------gCCGCGGAGCucgcgcugucggCCGCCGCcuuAGCc -3'
miRNA:   3'- auauuuaGGCGUCUCG------------GGCGGCG---UCG- -5'
6491 3' -55 NC_001847.1 + 115815 0.66 0.900266
Target:  5'- ------gCCGCGGcgcuugcguuaacAGCCacgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC-------------UCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 115791 0.76 0.372311
Target:  5'- ----cGUUCGCGGAG-CCGCUGCGGCu -3'
miRNA:   3'- auauuUAGGCGUCUCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 115680 0.7 0.718523
Target:  5'- gGUGAGcggCUGCgcgggggcgAGAGCCgGCUGCGGCc -3'
miRNA:   3'- aUAUUUa--GGCG---------UCUCGGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 115405 0.67 0.849268
Target:  5'- ------cCCGCuaAGcGGCCCGCCGCguccGGCc -3'
miRNA:   3'- auauuuaGGCG--UC-UCGGGCGGCG----UCG- -5'
6491 3' -55 NC_001847.1 + 114996 0.71 0.645703
Target:  5'- --cGAGUCCGCAucGGGCCgagcuucguuCGCCGCGcGCc -3'
miRNA:   3'- auaUUUAGGCGU--CUCGG----------GCGGCGU-CG- -5'
6491 3' -55 NC_001847.1 + 114758 0.66 0.894246
Target:  5'- ------aCCGguGAGCCa-CCGCgAGCg -3'
miRNA:   3'- auauuuaGGCguCUCGGgcGGCG-UCG- -5'
6491 3' -55 NC_001847.1 + 114430 0.67 0.872781
Target:  5'- ---cGGUCCGCcagcGGGGCCuCGUccuCGUAGCa -3'
miRNA:   3'- auauUUAGGCG----UCUCGG-GCG---GCGUCG- -5'
6491 3' -55 NC_001847.1 + 114268 0.82 0.161425
Target:  5'- ----cGUCCGCccaguauaaAGAGCgCCGCCGCAGCg -3'
miRNA:   3'- auauuUAGGCG---------UCUCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 113255 0.68 0.831683
Target:  5'- gGUAG--UCGCGGgcucggccucggcAGCgCGCCGCAGCc -3'
miRNA:   3'- aUAUUuaGGCGUC-------------UCGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 113169 0.67 0.872781
Target:  5'- ------aCCGCGGgcGGCaaccggCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC--UCGg-----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 112740 0.75 0.432976
Target:  5'- ------cCCGCGGAcgagcacGCUCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCU-------CGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 112623 0.7 0.728692
Target:  5'- ----uGUCCcgGCAGAccggcccgGCCCGCCGCcGCc -3'
miRNA:   3'- auauuUAGG--CGUCU--------CGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 110199 0.7 0.718523
Target:  5'- ------cCUGCcGGGCaagCCGCCGCAGCu -3'
miRNA:   3'- auauuuaGGCGuCUCG---GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 109954 0.66 0.887328
Target:  5'- -------gCGCGGGGCUCGCUGgcCAGCu -3'
miRNA:   3'- auauuuagGCGUCUCGGGCGGC--GUCG- -5'
6491 3' -55 NC_001847.1 + 109755 0.74 0.452552
Target:  5'- aGUGcuUCCGCGGucccccuccGCCCGCCGCcGCc -3'
miRNA:   3'- aUAUuuAGGCGUCu--------CGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 109427 0.67 0.841005
Target:  5'- ------cCUGUgugaAGGGCCCaGCCGCGGUg -3'
miRNA:   3'- auauuuaGGCG----UCUCGGG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 109402 0.68 0.815042
Target:  5'- cGUGccgCCGCc--GCCCGCCGCcGCu -3'
miRNA:   3'- aUAUuuaGGCGucuCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 109155 0.69 0.748755
Target:  5'- -----cUCCGgggagcCAGAGCCgGCCGCGcGCu -3'
miRNA:   3'- auauuuAGGC------GUCUCGGgCGGCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.