miRNA display CGI


Results 101 - 120 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 108854 0.68 0.806025
Target:  5'- ------gCCGC-GAGUCacuuGCCGCAGCg -3'
miRNA:   3'- auauuuaGGCGuCUCGGg---CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 108554 0.69 0.768384
Target:  5'- ------cCCGCGGGGCgguUCGCCGCcaAGCu -3'
miRNA:   3'- auauuuaGGCGUCUCG---GGCGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 107997 0.67 0.838486
Target:  5'- ------aCCGCGGcgcgggagaAGCCCucgccggcucucucGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGUC---------UCGGG--------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 107700 0.7 0.728692
Target:  5'- ------gCgGCAGGGCCCccgcGCCGCuGCg -3'
miRNA:   3'- auauuuaGgCGUCUCGGG----CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 107392 0.69 0.752718
Target:  5'- ------cCCGCAcAGCCCcccgccgcaaccgccGCCGCGGCu -3'
miRNA:   3'- auauuuaGGCGUcUCGGG---------------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 107194 0.66 0.894246
Target:  5'- ------aCCGC-GAGCgcgcgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGuCUCGg----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 107152 0.66 0.880172
Target:  5'- ------gCCGCGGccgccuccGCCCcgGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUCu-------CGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 106803 0.7 0.697961
Target:  5'- gAUGAcggCCGCGcuGCCCGCCggcgaGCGGCa -3'
miRNA:   3'- aUAUUua-GGCGUcuCGGGCGG-----CGUCG- -5'
6491 3' -55 NC_001847.1 + 106684 0.67 0.865163
Target:  5'- -----cUCCaGCGGcggcGGCCCGUCGCgcGGCg -3'
miRNA:   3'- auauuuAGG-CGUC----UCGGGCGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 106663 0.66 0.900922
Target:  5'- --cGGcgCCGCGGcGUCCGCgGC-GCg -3'
miRNA:   3'- auaUUuaGGCGUCuCGGGCGgCGuCG- -5'
6491 3' -55 NC_001847.1 + 106520 0.67 0.872781
Target:  5'- ------gCCGCGG-GCCCcgcgGCCGCcGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGG----CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 106424 0.67 0.865163
Target:  5'- -----cUCUGCAGccaGGCCauggCGUCGCGGCg -3'
miRNA:   3'- auauuuAGGCGUC---UCGG----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 106053 0.66 0.900922
Target:  5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 106028 0.67 0.849268
Target:  5'- ---uAGUCCGCAcuGGGCCCGUaCGCGu- -3'
miRNA:   3'- auauUUAGGCGU--CUCGGGCG-GCGUcg -5'
6491 3' -55 NC_001847.1 + 106019 0.66 0.907352
Target:  5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3'
miRNA:   3'- auauUUAGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 105931 0.71 0.624655
Target:  5'- ----cGUCUGCuccAGCCCGCCGUcgGGCa -3'
miRNA:   3'- auauuUAGGCGuc-UCGGGCGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 105911 0.79 0.268018
Target:  5'- ------gCCGCGGccggcaggccgcGGCCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGUC------------UCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 105906 0.65 0.913534
Target:  5'- ------gCCGCGGGGCCaUGCaGUGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGG-GCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 105843 0.71 0.656214
Target:  5'- ----uGUCCGCGGccgcGGCCUcuGCCGcCAGCg -3'
miRNA:   3'- auauuUAGGCGUC----UCGGG--CGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 105830 0.66 0.880172
Target:  5'- ------aCCGCGucgcGGGCCgCGCCgaGCAGCu -3'
miRNA:   3'- auauuuaGGCGU----CUCGG-GCGG--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.