miRNA display CGI


Results 121 - 140 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 105782 0.68 0.832541
Target:  5'- -----cUCgGCGGcAGCgCCGCCGgGGCc -3'
miRNA:   3'- auauuuAGgCGUC-UCG-GGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 105750 0.67 0.865163
Target:  5'- --cAGGUuaGgAGGGCCuCGCgCGCGGCa -3'
miRNA:   3'- auaUUUAggCgUCUCGG-GCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 105638 0.67 0.865163
Target:  5'- -----cUCUGCGGccgaAGCgCCGCCcGCGGCc -3'
miRNA:   3'- auauuuAGGCGUC----UCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 105499 0.67 0.849268
Target:  5'- ----cGUCCuCcGGGUCCGCCcGCGGCg -3'
miRNA:   3'- auauuUAGGcGuCUCGGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 105234 0.7 0.677166
Target:  5'- ------cCCGaGGGGCCCcCCGCGGCg -3'
miRNA:   3'- auauuuaGGCgUCUCGGGcGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104997 0.73 0.531139
Target:  5'- ---uGGUCCGC-GAGCCgCGCCGCgaccucggGGCg -3'
miRNA:   3'- auauUUAGGCGuCUCGG-GCGGCG--------UCG- -5'
6491 3' -55 NC_001847.1 + 104904 0.8 0.236935
Target:  5'- ------cCCGCGGGGCCCGC-GCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 104846 0.72 0.558812
Target:  5'- --gGGGUCCGCgaucugcgacauccAGGccacGCgCCGCCGCAGCg -3'
miRNA:   3'- auaUUUAGGCG--------------UCU----CG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104781 0.69 0.778011
Target:  5'- --cAGcgCCG-AGGGCCCGCCaGCAacGCg -3'
miRNA:   3'- auaUUuaGGCgUCUCGGGCGG-CGU--CG- -5'
6491 3' -55 NC_001847.1 + 104724 0.67 0.841005
Target:  5'- -----cUCCGCGcccgccacGAGCuuGCCgGCGGCc -3'
miRNA:   3'- auauuuAGGCGU--------CUCGggCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 104712 0.84 0.117406
Target:  5'- --cAGcgCCGCgagcgcgugcgAGAGCCCGCCGCGGCg -3'
miRNA:   3'- auaUUuaGGCG-----------UCUCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104591 0.69 0.778011
Target:  5'- --aGAcgCCGCGGAGCCgCGCgacgaGCucGGCg -3'
miRNA:   3'- auaUUuaGGCGUCUCGG-GCGg----CG--UCG- -5'
6491 3' -55 NC_001847.1 + 104537 0.67 0.872781
Target:  5'- ------gCCGCc--GCCgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGucuCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104438 0.66 0.900922
Target:  5'- ------gCCGCGGcAGCaCCGCgGCGcGCa -3'
miRNA:   3'- auauuuaGGCGUC-UCG-GGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 104400 0.66 0.880172
Target:  5'- ------gCCGCGGucuacGCCCGCC-CAGUc -3'
miRNA:   3'- auauuuaGGCGUCu----CGGGCGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 104374 0.69 0.768384
Target:  5'- ------cCCGCAGAcGCgcggCGCUGCAGCg -3'
miRNA:   3'- auauuuaGGCGUCU-CGg---GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104332 0.68 0.806025
Target:  5'- ------gCCGCcGuGUuuGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGuCuCGggCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104292 0.68 0.806025
Target:  5'- ------gCgGCAGAGCCgcaGCgGCGGCg -3'
miRNA:   3'- auauuuaGgCGUCUCGGg--CGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 104049 0.7 0.728692
Target:  5'- ------cCCGCAG-GCCagguacaccgGCCGCAGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGg---------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 103990 0.68 0.815042
Target:  5'- -------gCGCAGAagGCcaCCGCCGCGGCc -3'
miRNA:   3'- auauuuagGCGUCU--CG--GGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.