miRNA display CGI


Results 81 - 100 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 101380 0.72 0.572282
Target:  5'- ------gCCGCGGGGgCUGCCcGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCgGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 83012 0.72 0.572282
Target:  5'- cGUcgGUCCGCuGGGGCgCCGCCggcccGCGGCc -3'
miRNA:   3'- aUAuuUAGGCG-UCUCG-GGCGG-----CGUCG- -5'
6491 3' -55 NC_001847.1 + 12074 0.72 0.582697
Target:  5'- --cGAggCCGCGGAGCgCCGCggguccggcgccCGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUCUCG-GGCG------------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 73134 0.72 0.582697
Target:  5'- cAUAcggCCGCAGGGCCCcgcGCCGCucuucgGGCc -3'
miRNA:   3'- aUAUuuaGGCGUCUCGGG---CGGCG------UCG- -5'
6491 3' -55 NC_001847.1 + 84626 0.72 0.582697
Target:  5'- -----uUCgaGCGGGGCCaUGCCGCGGCu -3'
miRNA:   3'- auauuuAGg-CGUCUCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 134036 0.72 0.582697
Target:  5'- --gGAggCCGCGGcGGCgCCGCCcGCGGCc -3'
miRNA:   3'- auaUUuaGGCGUC-UCG-GGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 124401 0.72 0.586874
Target:  5'- --gGGggCCGCGGGGcCCCGCCccccuaaacucgcugGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCUC-GGGCGG---------------CGUCG- -5'
6491 3' -55 NC_001847.1 + 103702 0.73 0.541335
Target:  5'- ------cCCGCGccGGGgCCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGU--CUCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 104997 0.73 0.531139
Target:  5'- ---uGGUCCGC-GAGCCgCGCCGCgaccucggGGCg -3'
miRNA:   3'- auauUUAGGCGuCUCGG-GCGGCG--------UCG- -5'
6491 3' -55 NC_001847.1 + 40169 0.73 0.531139
Target:  5'- --cAAAgCCGCGGGGgCUGCgCGCGGCg -3'
miRNA:   3'- auaUUUaGGCGUCUCgGGCG-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 41022 0.74 0.500999
Target:  5'- ----cGUCCuGCAacGGGCgCGCCGCGGCg -3'
miRNA:   3'- auauuUAGG-CGU--CUCGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 73769 0.74 0.500999
Target:  5'- aGUAccuGAUCCGCGacGCCuCGCCGguGCg -3'
miRNA:   3'- aUAU---UUAGGCGUcuCGG-GCGGCguCG- -5'
6491 3' -55 NC_001847.1 + 131774 0.73 0.510966
Target:  5'- -----cUCCuGCAGAGCCUGCgGCGcGCg -3'
miRNA:   3'- auauuuAGG-CGUCUCGGGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 95324 0.73 0.510966
Target:  5'- --aGGAagCGCucGGGCCCGCCGCGGa -3'
miRNA:   3'- auaUUUagGCGu-CUCGGGCGGCGUCg -5'
6491 3' -55 NC_001847.1 + 133069 0.73 0.510966
Target:  5'- ------cCCGCGGGGCgcucgccgccaCCGCUGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCG-----------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 31881 0.73 0.521015
Target:  5'- ------gCCgGCGGAGCCCGUCGC-GCg -3'
miRNA:   3'- auauuuaGG-CGUCUCGGGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 85744 0.73 0.521015
Target:  5'- -----cUgCGCGGAGCCCGCCaugaCGGCa -3'
miRNA:   3'- auauuuAgGCGUCUCGGGCGGc---GUCG- -5'
6491 3' -55 NC_001847.1 + 75776 0.73 0.521015
Target:  5'- gGUGAAcacggCCGCGG-GCUCGgCGCGGCg -3'
miRNA:   3'- aUAUUUa----GGCGUCuCGGGCgGCGUCG- -5'
6491 3' -55 NC_001847.1 + 34455 0.73 0.531139
Target:  5'- --cGAggCCGCGGuGgCCGCCgGCGGCg -3'
miRNA:   3'- auaUUuaGGCGUCuCgGGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 78596 0.72 0.592102
Target:  5'- ------gCCGCgcucccuGGAGCugCCGCCGCGGCa -3'
miRNA:   3'- auauuuaGGCG-------UCUCG--GGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.