miRNA display CGI


Results 81 - 100 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 4381 0.66 0.894246
Target:  5'- ------aCCGC-GAGCgcgcgCGCCGCGGCc -3'
miRNA:   3'- auauuuaGGCGuCUCGg----GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 55151 0.66 0.894246
Target:  5'- -------gCGUAGAGCCCcCCaGCGGCc -3'
miRNA:   3'- auauuuagGCGUCUCGGGcGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 33939 0.66 0.894246
Target:  5'- ----cGUgUGCAG-GCCCGCCGgAGa -3'
miRNA:   3'- auauuUAgGCGUCuCGGGCGGCgUCg -5'
6491 3' -55 NC_001847.1 + 86367 0.66 0.887328
Target:  5'- ------cCCGCAGAcgaggcggcgGgCCGCgGCGGCg -3'
miRNA:   3'- auauuuaGGCGUCU----------CgGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 127903 0.66 0.887328
Target:  5'- ------cCCGCAcAGCcacccgaccagCCGCUGCAGCg -3'
miRNA:   3'- auauuuaGGCGUcUCG-----------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 36019 0.66 0.887328
Target:  5'- --aGAAUCCaucuugGCuGAGCggUGCCGCGGCa -3'
miRNA:   3'- auaUUUAGG------CGuCUCGg-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 125083 0.66 0.887328
Target:  5'- -------gCGCuGGGCCCGC-GCGGCc -3'
miRNA:   3'- auauuuagGCGuCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 99149 0.66 0.900922
Target:  5'- ------cCCGCGGccGCCUGCagCGCGGCu -3'
miRNA:   3'- auauuuaGGCGUCu-CGGGCG--GCGUCG- -5'
6491 3' -55 NC_001847.1 + 21945 0.66 0.900922
Target:  5'- ------aCCGC--GGCUCGCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 55452 0.66 0.900922
Target:  5'- ----cAUCCGCAaagccaccGAGCCCGUauucgaggagauCGUGGCg -3'
miRNA:   3'- auauuUAGGCGU--------CUCGGGCG------------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 39818 0.66 0.880172
Target:  5'- ----cGUCCGCGGcgGGCCCGagCGCuuccuGCg -3'
miRNA:   3'- auauuUAGGCGUC--UCGGGCg-GCGu----CG- -5'
6491 3' -55 NC_001847.1 + 39060 0.66 0.880172
Target:  5'- ------cUCGUGGGGCUCGC-GCAGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 117031 0.66 0.880172
Target:  5'- ----uGUCUGCccggcgGGGGCUCGCCGaggaGGCg -3'
miRNA:   3'- auauuUAGGCG------UCUCGGGCGGCg---UCG- -5'
6491 3' -55 NC_001847.1 + 127705 0.67 0.872781
Target:  5'- aGUAGGUCCGCgcuAGcgacugcgccuuGGCaagCCGCCGguGCc -3'
miRNA:   3'- aUAUUUAGGCG---UC------------UCG---GGCGGCguCG- -5'
6491 3' -55 NC_001847.1 + 54508 0.67 0.872781
Target:  5'- ------cCCGC-GAGCgCCGCCGUcGCc -3'
miRNA:   3'- auauuuaGGCGuCUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 30020 0.65 0.913534
Target:  5'- ------cCCGCgugcuGGGGCCCauGCCGCccGGCg -3'
miRNA:   3'- auauuuaGGCG-----UCUCGGG--CGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 62914 0.65 0.913534
Target:  5'- --cGGGUgCuCGGGGCCCGCgGgCGGCu -3'
miRNA:   3'- auaUUUAgGcGUCUCGGGCGgC-GUCG- -5'
6491 3' -55 NC_001847.1 + 38953 0.66 0.907352
Target:  5'- --gGGggCCGC-GAGCgCCauggcggcgGCCGCGGCg -3'
miRNA:   3'- auaUUuaGGCGuCUCG-GG---------CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 38076 0.66 0.907352
Target:  5'- -------gCGCGGcGgCCGCCGCGGUc -3'
miRNA:   3'- auauuuagGCGUCuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 106663 0.66 0.900922
Target:  5'- --cGGcgCCGCGGcGUCCGCgGC-GCg -3'
miRNA:   3'- auaUUuaGGCGUCuCGGGCGgCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.