miRNA display CGI


Results 41 - 60 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 5162 0.66 0.588876
Target:  5'- cGGGCCaggcaucgGCGGCGauuucggggaacaGCgCCGCGAGCGCg- -3'
miRNA:   3'- -CUCGG--------CGUCGC-------------CGaGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 35734 0.66 0.599862
Target:  5'- uGGCCGCGGUGGaguggCUGCagcaagcGCGCUCu -3'
miRNA:   3'- cUCGGCGUCGCCga---GGCGcu-----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 91625 0.66 0.609873
Target:  5'- cGGCUGCGGCuGCggCUGCGGcuGCgGCUCu -3'
miRNA:   3'- cUCGGCGUCGcCGa-GGCGCU--UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 3935 0.66 0.579914
Target:  5'- -cGCUgGCAGCGGg-CgGCGAGCGCg- -3'
miRNA:   3'- cuCGG-CGUCGCCgaGgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 14560 0.66 0.619901
Target:  5'- -cGCCGCAGCgcgGGUgCUGgCGGGCGCg- -3'
miRNA:   3'- cuCGGCGUCG---CCGaGGC-GCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 47566 0.66 0.609873
Target:  5'- gGAGCC-CGGCGGC--CGCGcACGCg- -3'
miRNA:   3'- -CUCGGcGUCGCCGagGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 9518 0.66 0.619901
Target:  5'- cGAGCCGagcgGGCGGCgcgcuagcgUCCGUGcgugcgccAGCGCUg -3'
miRNA:   3'- -CUCGGCg---UCGCCG---------AGGCGC--------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 131354 0.66 0.599862
Target:  5'- cGGCCGCgugcgcuucGGCGGCgcgggcgacacCCGCGAGgGcCUCu -3'
miRNA:   3'- cUCGGCG---------UCGCCGa----------GGCGCUUgC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 47848 0.66 0.598862
Target:  5'- -cGUCGCAggaggucGCGuGCUgCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGU-------CGC-CGAgGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 19316 0.66 0.628934
Target:  5'- cGGCCGCGGCcguGGCUguuaacgcaagcgCCGCGGccgggucuuGCGCg- -3'
miRNA:   3'- cUCGGCGUCG---CCGA-------------GGCGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 40198 0.66 0.619901
Target:  5'- cGGCCGCcgauGCGGU--CGUGGGCGuCUCg -3'
miRNA:   3'- cUCGGCGu---CGCCGagGCGCUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 44829 0.66 0.579914
Target:  5'- cGGCCcCGGCGGCcCCacCGAacgcGCGCUCg -3'
miRNA:   3'- cUCGGcGUCGCCGaGGc-GCU----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 115703 0.66 0.629938
Target:  5'- uGGCCcgGCAGCgGGCg-CGCGGccuuugGCGCUCc -3'
miRNA:   3'- cUCGG--CGUCG-CCGagGCGCU------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 31805 0.66 0.609873
Target:  5'- cGGCCGUGGCGGUgggcggCGCGGGgGCa- -3'
miRNA:   3'- cUCGGCGUCGCCGag----GCGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 32997 0.66 0.604865
Target:  5'- cGGGCCGCGccgccguggucgcGCGGagugccgccgcccuCUCCGCcGAgcuggacGCGCUCg -3'
miRNA:   3'- -CUCGGCGU-------------CGCC--------------GAGGCG-CU-------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 49285 0.66 0.599862
Target:  5'- -cGCCGC-GCGGagCCGCGAcuCGCUg -3'
miRNA:   3'- cuCGGCGuCGCCgaGGCGCUu-GCGAg -5'
6491 5' -61.5 NC_001847.1 + 2666 0.66 0.579914
Target:  5'- -cGCC-CGGCGGCUCgGCcGGCaucgGCUCg -3'
miRNA:   3'- cuCGGcGUCGCCGAGgCGcUUG----CGAG- -5'
6491 5' -61.5 NC_001847.1 + 99413 0.66 0.619901
Target:  5'- aAGCCGCAggguacGCGGUagCCGCauACGCUg -3'
miRNA:   3'- cUCGGCGU------CGCCGa-GGCGcuUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 92645 0.66 0.599862
Target:  5'- -cGCC-CGGCGGUUUCGCccgcAGCGCUUc -3'
miRNA:   3'- cuCGGcGUCGCCGAGGCGc---UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 39115 0.66 0.619901
Target:  5'- uAGCgcaaCGCGGCGGCcgacgcgCCGCGcuGGgGCUCg -3'
miRNA:   3'- cUCG----GCGUCGCCGa------GGCGC--UUgCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.