miRNA display CGI


Results 61 - 80 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 91625 0.66 0.609873
Target:  5'- cGGCUGCGGCuGCggCUGCGGcuGCgGCUCu -3'
miRNA:   3'- cUCGGCGUCGcCGa-GGCGCU--UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 72920 0.66 0.629938
Target:  5'- aGGCgGuCGGCGGCgUCGgGuuuACGCUCa -3'
miRNA:   3'- cUCGgC-GUCGCCGaGGCgCu--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 72038 0.66 0.579914
Target:  5'- -cGCgGCGGCGGCcCCG-GGGCGUa- -3'
miRNA:   3'- cuCGgCGUCGCCGaGGCgCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 9635 0.66 0.619901
Target:  5'- -cGCCGCGcCGGC-CCGC---CGCUCg -3'
miRNA:   3'- cuCGGCGUcGCCGaGGCGcuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 70511 0.66 0.638972
Target:  5'- cGGGCaucaaGCAGCGGCUgCUggGCGGcgugcugGCGCUg -3'
miRNA:   3'- -CUCGg----CGUCGCCGA-GG--CGCU-------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 75784 0.66 0.629938
Target:  5'- cGGCCGCG--GGCUCgGCGcGGCGCg- -3'
miRNA:   3'- cUCGGCGUcgCCGAGgCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 83028 0.66 0.629938
Target:  5'- -cGCCGC--CGGC-CCGCGGcCGCUa -3'
miRNA:   3'- cuCGGCGucGCCGaGGCGCUuGCGAg -5'
6491 5' -61.5 NC_001847.1 + 31805 0.66 0.609873
Target:  5'- cGGCCGUGGCGGUgggcggCGCGGGgGCa- -3'
miRNA:   3'- cUCGGCGUCGCCGag----GCGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 12458 0.66 0.589873
Target:  5'- -cGCgCGCGGCGGagcCUCCGCGGcuucccGCGUg- -3'
miRNA:   3'- cuCG-GCGUCGCC---GAGGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 17088 0.66 0.589873
Target:  5'- cAGCCGCguaaaAGCGGCgcUCCauGUuAGCGCUCu -3'
miRNA:   3'- cUCGGCG-----UCGCCG--AGG--CGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 17712 0.66 0.583893
Target:  5'- -cGCCGCAgugcacguacaGCGGCUCgGCguacGAggcggccacggccucGCGCUCg -3'
miRNA:   3'- cuCGGCGU-----------CGCCGAGgCG----CU---------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 53248 0.66 0.599862
Target:  5'- uGGCUGCGGCGccgcCUCgGCgGGGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCc---GAGgCG-CUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 2666 0.66 0.579914
Target:  5'- -cGCC-CGGCGGCUCgGCcGGCaucgGCUCg -3'
miRNA:   3'- cuCGGcGUCGCCGAGgCGcUUG----CGAG- -5'
6491 5' -61.5 NC_001847.1 + 114737 0.66 0.639976
Target:  5'- cGGGaCCGguGcCGGCggucgcggUCGCGGuCGCUCu -3'
miRNA:   3'- -CUC-GGCguC-GCCGa-------GGCGCUuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 76507 0.66 0.639976
Target:  5'- gGAGcCCGUguucGCGGCcuacguccCCGCGGGCGCg- -3'
miRNA:   3'- -CUC-GGCGu---CGCCGa-------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 73858 0.66 0.639976
Target:  5'- -cGCCGCcGCGGUg-CGCgGGGCGCgUCa -3'
miRNA:   3'- cuCGGCGuCGCCGagGCG-CUUGCG-AG- -5'
6491 5' -61.5 NC_001847.1 + 39115 0.66 0.619901
Target:  5'- uAGCgcaaCGCGGCGGCcgacgcgCCGCGcuGGgGCUCg -3'
miRNA:   3'- cUCG----GCGUCGCCGa------GGCGC--UUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 115703 0.66 0.629938
Target:  5'- uGGCCcgGCAGCgGGCg-CGCGGccuuugGCGCUCc -3'
miRNA:   3'- cUCGG--CGUCG-CCGagGCGCU------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 49285 0.66 0.599862
Target:  5'- -cGCCGC-GCGGagCCGCGAcuCGCUg -3'
miRNA:   3'- cuCGGCGuCGCCgaGGCGCUu-GCGAg -5'
6491 5' -61.5 NC_001847.1 + 84031 0.66 0.619901
Target:  5'- uGGUCGaCGGCGaGCUCgcgCGCGAGuCGCUa -3'
miRNA:   3'- cUCGGC-GUCGC-CGAG---GCGCUU-GCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.