miRNA display CGI


Results 81 - 100 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 2666 0.66 0.579914
Target:  5'- -cGCC-CGGCGGCUCgGCcGGCaucgGCUCg -3'
miRNA:   3'- cuCGGcGUCGCCGAGgCGcUUG----CGAG- -5'
6491 5' -61.5 NC_001847.1 + 53804 0.66 0.599862
Target:  5'- -uGCCGCAcguGCaaGGCgugUCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGU---CG--CCGa--GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 35924 0.66 0.599862
Target:  5'- gGAGCCuuuGUGGCGGCgcgCCGCc-GCGCg- -3'
miRNA:   3'- -CUCGG---CGUCGCCGa--GGCGcuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 118985 0.66 0.588876
Target:  5'- cGAG-CGCGGCGGCg-UGCGAcaugcugGCGCUg -3'
miRNA:   3'- -CUCgGCGUCGCCGagGCGCU-------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 104780 0.66 0.619901
Target:  5'- -cGCCG-GGCGGC-CCGCcAGCGcCUCc -3'
miRNA:   3'- cuCGGCgUCGCCGaGGCGcUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 68446 0.66 0.609873
Target:  5'- cGGCCGCAGaGG-UCCGCGccCGCg- -3'
miRNA:   3'- cUCGGCGUCgCCgAGGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 15929 0.66 0.619901
Target:  5'- -cGCCGCcccGCGGUggCCGCG-GCGC-Cg -3'
miRNA:   3'- cuCGGCGu--CGCCGa-GGCGCuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 35734 0.66 0.599862
Target:  5'- uGGCCGCGGUGGaguggCUGCagcaagcGCGCUCu -3'
miRNA:   3'- cUCGGCGUCGCCga---GGCGcu-----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 49285 0.66 0.599862
Target:  5'- -cGCCGC-GCGGagCCGCGAcuCGCUg -3'
miRNA:   3'- cuCGGCGuCGCCgaGGCGCUu-GCGAg -5'
6491 5' -61.5 NC_001847.1 + 5162 0.66 0.588876
Target:  5'- cGGGCCaggcaucgGCGGCGauuucggggaacaGCgCCGCGAGCGCg- -3'
miRNA:   3'- -CUCGG--------CGUCGC-------------CGaGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 97001 0.66 0.619901
Target:  5'- aGAGCgGguCGGCGGCgcuggCCGCGGggggcaGCGCg- -3'
miRNA:   3'- -CUCGgC--GUCGCCGa----GGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 9518 0.66 0.619901
Target:  5'- cGAGCCGagcgGGCGGCgcgcuagcgUCCGUGcgugcgccAGCGCUg -3'
miRNA:   3'- -CUCGGCg---UCGCCG---------AGGCGC--------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 38297 0.66 0.599862
Target:  5'- uGGCgGCAGCGGCaaCCGUGuagccAACGCcCg -3'
miRNA:   3'- cUCGgCGUCGCCGa-GGCGC-----UUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 69264 0.66 0.579914
Target:  5'- -cGCgGCuGGCGGCggCCGCGGGCuucCUCu -3'
miRNA:   3'- cuCGgCG-UCGCCGa-GGCGCUUGc--GAG- -5'
6491 5' -61.5 NC_001847.1 + 12458 0.66 0.589873
Target:  5'- -cGCgCGCGGCGGagcCUCCGCGGcuucccGCGUg- -3'
miRNA:   3'- cuCG-GCGUCGCC---GAGGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 48196 0.66 0.589873
Target:  5'- -uGCCGCgccGGCGGCcagggCCGagGAGCGCa- -3'
miRNA:   3'- cuCGGCG---UCGCCGa----GGCg-CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 116818 0.66 0.589873
Target:  5'- -cGCCcgGCAGCuGCUCCGCGugauuCGC-Cg -3'
miRNA:   3'- cuCGG--CGUCGcCGAGGCGCuu---GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 17088 0.66 0.589873
Target:  5'- cAGCCGCguaaaAGCGGCgcUCCauGUuAGCGCUCu -3'
miRNA:   3'- cUCGGCG-----UCGCCG--AGG--CGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 103484 0.66 0.589873
Target:  5'- aGAGCCGCAcuCGGa-CCGCGugUGUUCg -3'
miRNA:   3'- -CUCGGCGUc-GCCgaGGCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 85069 0.66 0.619901
Target:  5'- uGGCCGCGccCGGgUCCGCGccGCGCg- -3'
miRNA:   3'- cUCGGCGUc-GCCgAGGCGCu-UGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.