miRNA display CGI


Results 101 - 120 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 103484 0.66 0.589873
Target:  5'- aGAGCCGCAcuCGGa-CCGCGugUGUUCg -3'
miRNA:   3'- -CUCGGCGUc-GCCgaGGCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 81845 0.66 0.589873
Target:  5'- -cGCCGCacuGGCGGCgaucgaGCGcGCGUUCg -3'
miRNA:   3'- cuCGGCG---UCGCCGagg---CGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 47848 0.66 0.598862
Target:  5'- -cGUCGCAggaggucGCGuGCUgCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGU-------CGC-CGAgGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 133524 0.66 0.589873
Target:  5'- -cGCCGCGGU-GCUgCCGCG-GCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 58457 0.66 0.639976
Target:  5'- cAGCCGCAGCG---CCGCGcGCGUg- -3'
miRNA:   3'- cUCGGCGUCGCcgaGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 85069 0.66 0.619901
Target:  5'- uGGCCGCGccCGGgUCCGCGccGCGCg- -3'
miRNA:   3'- cUCGGCGUc-GCCgAGGCGCu-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 49285 0.66 0.599862
Target:  5'- -cGCCGC-GCGGagCCGCGAcuCGCUg -3'
miRNA:   3'- cuCGGCGuCGCCgaGGCGCUu-GCGAg -5'
6491 5' -61.5 NC_001847.1 + 91625 0.66 0.609873
Target:  5'- cGGCUGCGGCuGCggCUGCGGcuGCgGCUCu -3'
miRNA:   3'- cUCGGCGUCGcCGa-GGCGCU--UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 66057 0.66 0.619901
Target:  5'- -cGuCCGCGcGCGGCgccagacgCgGCGAGCGCg- -3'
miRNA:   3'- cuC-GGCGU-CGCCGa-------GgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 33180 0.66 0.629938
Target:  5'- -uGCCGUGaCGGC-CCGCGA--GCUCg -3'
miRNA:   3'- cuCGGCGUcGCCGaGGCGCUugCGAG- -5'
6491 5' -61.5 NC_001847.1 + 6765 0.66 0.609873
Target:  5'- cGGCCGguGCGaggcgccagcuGCUCCGUGGccaccagcaGCGCg- -3'
miRNA:   3'- cUCGGCguCGC-----------CGAGGCGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 53248 0.66 0.599862
Target:  5'- uGGCUGCGGCGccgcCUCgGCgGGGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCc---GAGgCG-CUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 3935 0.66 0.579914
Target:  5'- -cGCUgGCAGCGGg-CgGCGAGCGCg- -3'
miRNA:   3'- cuCGG-CGUCGCCgaGgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 33064 0.66 0.619901
Target:  5'- cGGGUCGCGcGCGGC-CCGCGccUGCc- -3'
miRNA:   3'- -CUCGGCGU-CGCCGaGGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 132601 0.66 0.639976
Target:  5'- cAGCCcgccggagaGCAGCGGUcCCGCGGcccggcagcaaaGCGCg- -3'
miRNA:   3'- cUCGG---------CGUCGCCGaGGCGCU------------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 116818 0.66 0.589873
Target:  5'- -cGCCcgGCAGCuGCUCCGCGugauuCGC-Cg -3'
miRNA:   3'- cuCGG--CGUCGcCGAGGCGCuu---GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 69264 0.66 0.579914
Target:  5'- -cGCgGCuGGCGGCggCCGCGGGCuucCUCu -3'
miRNA:   3'- cuCGgCG-UCGCCGa-GGCGCUUGc--GAG- -5'
6491 5' -61.5 NC_001847.1 + 44829 0.66 0.579914
Target:  5'- cGGCCcCGGCGGCcCCacCGAacgcGCGCUCg -3'
miRNA:   3'- cUCGGcGUCGCCGaGGc-GCU----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 33174 0.66 0.579914
Target:  5'- -cGCUGCAGCGGCuggccggcUCUGCGcccgacuuggcGGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCG--------AGGCGC-----------UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 93526 0.66 0.589873
Target:  5'- -cGCC-CGGCGGCcCCG-GAGCGCcCg -3'
miRNA:   3'- cuCGGcGUCGCCGaGGCgCUUGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.