miRNA display CGI


Results 121 - 140 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 67462 0.66 0.609873
Target:  5'- cAGCgCGCGcGCGGCggCCGCG-GCGUcgUCg -3'
miRNA:   3'- cUCG-GCGU-CGCCGa-GGCGCuUGCG--AG- -5'
6491 5' -61.5 NC_001847.1 + 19250 0.66 0.619901
Target:  5'- cGAGCCGgccaAGCGGCgcgagCCGgCG-GCGCa- -3'
miRNA:   3'- -CUCGGCg---UCGCCGa----GGC-GCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 53804 0.66 0.599862
Target:  5'- -uGCCGCAcguGCaaGGCgugUCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGU---CG--CCGa--GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 32997 0.66 0.604865
Target:  5'- cGGGCCGCGccgccguggucgcGCGGagugccgccgcccuCUCCGCcGAgcuggacGCGCUCg -3'
miRNA:   3'- -CUCGGCGU-------------CGCC--------------GAGGCG-CU-------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 2666 0.66 0.579914
Target:  5'- -cGCC-CGGCGGCUCgGCcGGCaucgGCUCg -3'
miRNA:   3'- cuCGGcGUCGCCGAGgCGcUUG----CGAG- -5'
6491 5' -61.5 NC_001847.1 + 133524 0.66 0.589873
Target:  5'- -cGCCGCGGU-GCUgCCGCG-GCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 116818 0.66 0.589873
Target:  5'- -cGCCcgGCAGCuGCUCCGCGugauuCGC-Cg -3'
miRNA:   3'- cuCGG--CGUCGcCGAGGCGCuu---GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 101079 0.66 0.579914
Target:  5'- -cGCCGCGGgGGCcgggUCgGCGGggcgggcgggcGCGUUCg -3'
miRNA:   3'- cuCGGCGUCgCCG----AGgCGCU-----------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 31805 0.66 0.609873
Target:  5'- cGGCCGUGGCGGUgggcggCGCGGGgGCa- -3'
miRNA:   3'- cUCGGCGUCGCCGag----GCGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 35924 0.66 0.599862
Target:  5'- gGAGCCuuuGUGGCGGCgcgCCGCc-GCGCg- -3'
miRNA:   3'- -CUCGG---CGUCGCCGa--GGCGcuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 35734 0.66 0.599862
Target:  5'- uGGCCGCGGUGGaguggCUGCagcaagcGCGCUCu -3'
miRNA:   3'- cUCGGCGUCGCCga---GGCGcu-----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 47848 0.66 0.598862
Target:  5'- -cGUCGCAggaggucGCGuGCUgCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGU-------CGC-CGAgGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 93526 0.66 0.589873
Target:  5'- -cGCC-CGGCGGCcCCG-GAGCGCcCg -3'
miRNA:   3'- cuCGGcGUCGCCGaGGCgCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 72038 0.66 0.579914
Target:  5'- -cGCgGCGGCGGCcCCG-GGGCGUa- -3'
miRNA:   3'- cuCGgCGUCGCCGaGGCgCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 100553 0.66 0.599862
Target:  5'- gGAGCCgGCcGCGGCgauuauugCCGCcaGGCGCUg -3'
miRNA:   3'- -CUCGG-CGuCGCCGa-------GGCGc-UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 92645 0.66 0.599862
Target:  5'- -cGCC-CGGCGGUUUCGCccgcAGCGCUUc -3'
miRNA:   3'- cuCGGcGUCGCCGAGGCGc---UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 89534 0.66 0.608871
Target:  5'- cGGGCgGCAGCgacgggucagauuGGC-CCGCGGGcCGCg- -3'
miRNA:   3'- -CUCGgCGUCG-------------CCGaGGCGCUU-GCGag -5'
6491 5' -61.5 NC_001847.1 + 91625 0.66 0.609873
Target:  5'- cGGCUGCGGCuGCggCUGCGGcuGCgGCUCu -3'
miRNA:   3'- cUCGGCGUCGcCGa-GGCGCU--UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 68446 0.66 0.609873
Target:  5'- cGGCCGCAGaGG-UCCGCGccCGCg- -3'
miRNA:   3'- cUCGGCGUCgCCgAGGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 15929 0.66 0.619901
Target:  5'- -cGCCGCcccGCGGUggCCGCG-GCGC-Cg -3'
miRNA:   3'- cuCGGCGu--CGCCGa-GGCGCuUGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.