miRNA display CGI


Results 141 - 160 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 93746 0.66 0.619901
Target:  5'- uAGaCCGCgcgguccgggAGCGGCUgaGCGAgcgugacguGCGCUCu -3'
miRNA:   3'- cUC-GGCG----------UCGCCGAggCGCU---------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 85069 0.66 0.619901
Target:  5'- uGGCCGCGccCGGgUCCGCGccGCGCg- -3'
miRNA:   3'- cUCGGCGUc-GCCgAGGCGCu-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 33064 0.66 0.619901
Target:  5'- cGGGUCGCGcGCGGC-CCGCGccUGCc- -3'
miRNA:   3'- -CUCGGCGU-CGCCGaGGCGCuuGCGag -5'
6491 5' -61.5 NC_001847.1 + 64169 0.67 0.550277
Target:  5'- aGGCCGCuugcgcggacggGGCGGCgggCGCG-ACGCUg -3'
miRNA:   3'- cUCGGCG------------UCGCCGag-GCGCuUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 106799 0.67 0.550277
Target:  5'- gGGGCCcggGCGcGCGGCcCCGCgGGGCGC-Cg -3'
miRNA:   3'- -CUCGG---CGU-CGCCGaGGCG-CUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 64418 0.67 0.549296
Target:  5'- --uUgGCAGCGGCUguccucgcgcucgCCGCGGGCGCc- -3'
miRNA:   3'- cucGgCGUCGCCGA-------------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 88593 0.67 0.540497
Target:  5'- cGGCCGC-GCGGCUggaggaccUCGCGcGCGC-Cg -3'
miRNA:   3'- cUCGGCGuCGCCGA--------GGCGCuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 79226 0.67 0.540497
Target:  5'- cGGCCGCggaucacgGGCGcGCUCCcCGAGCuGCUa -3'
miRNA:   3'- cUCGGCG--------UCGC-CGAGGcGCUUG-CGAg -5'
6491 5' -61.5 NC_001847.1 + 60302 0.67 0.540497
Target:  5'- gGGGCgGCgGGCGGCagCGCGcGCGC-Ca -3'
miRNA:   3'- -CUCGgCG-UCGCCGagGCGCuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 104694 0.67 0.550277
Target:  5'- cAGCaGCAGcCGGUUgcccagcgCCGCGAGCGCg- -3'
miRNA:   3'- cUCGgCGUC-GCCGA--------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 86586 0.67 0.539523
Target:  5'- cGGCgGCGcuucguucuuuacGCGGCUCCGgGcGCGcCUCg -3'
miRNA:   3'- cUCGgCGU-------------CGCCGAGGCgCuUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 82901 0.67 0.521121
Target:  5'- aAGCCGCGGCGcGCggcgCC-CGGGgGCUUu -3'
miRNA:   3'- cUCGGCGUCGC-CGa---GGcGCUUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 83057 0.67 0.521121
Target:  5'- uGGGCCGCGGC-GCggCCGaaGAGCGCa- -3'
miRNA:   3'- -CUCGGCGUCGcCGa-GGCg-CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 103427 0.67 0.521121
Target:  5'- --uCCGCAGCGGCg-CGCGGcccGCGcCUCc -3'
miRNA:   3'- cucGGCGUCGCCGagGCGCU---UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 122777 0.67 0.521121
Target:  5'- aGGCCGCAGCcgccgacGCUCC-CGAGCcaggcccaccGCUCa -3'
miRNA:   3'- cUCGGCGUCGc------CGAGGcGCUUG----------CGAG- -5'
6491 5' -61.5 NC_001847.1 + 16632 0.67 0.527874
Target:  5'- gGGGgCGCGGCGGCUuugccgucggggccCCGCGccuacaGGCGCg- -3'
miRNA:   3'- -CUCgGCGUCGCCGA--------------GGCGC------UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 18555 0.67 0.530777
Target:  5'- aGAGCgGCAGC-GCUgCGCccaGAGCGCa- -3'
miRNA:   3'- -CUCGgCGUCGcCGAgGCG---CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 79694 0.67 0.530777
Target:  5'- cGGGCU-CGGUGGCUuuGCGGAUGUg- -3'
miRNA:   3'- -CUCGGcGUCGCCGAggCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 83571 0.67 0.530777
Target:  5'- cGGCUGCccCGGCgCCGCGGaaGCGCUg -3'
miRNA:   3'- cUCGGCGucGCCGaGGCGCU--UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 65449 0.67 0.521121
Target:  5'- -cGCCGCGGaccgagcgcCGGCcCCGCGcccAACGCUg -3'
miRNA:   3'- cuCGGCGUC---------GCCGaGGCGC---UUGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.