miRNA display CGI


Results 81 - 100 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 31429 0.73 0.252597
Target:  5'- cAGCCGCGGCGGacgUCGCuGGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCga-GGCGcUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 106309 0.73 0.258593
Target:  5'- cGGCgGCAGCGGCgCCGUc-ACGCUCc -3'
miRNA:   3'- cUCGgCGUCGCCGaGGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 3898 0.73 0.246716
Target:  5'- cGAGCCGUugcgcGCGGUggCGCGGACGCa- -3'
miRNA:   3'- -CUCGGCGu----CGCCGagGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 43124 0.73 0.252597
Target:  5'- -uGcCCGCAGaCGGCgcgggcCCGCGGGCGCUg -3'
miRNA:   3'- cuC-GGCGUC-GCCGa-----GGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 38580 0.73 0.252597
Target:  5'- gGAGCCGCGGaGGCUCCugGCguuGAGCGCg- -3'
miRNA:   3'- -CUCGGCGUCgCCGAGG--CG---CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 6963 0.73 0.246716
Target:  5'- gGGGUCGCGGCGGCgcuuccgcCCGCGGGcCGCcCa -3'
miRNA:   3'- -CUCGGCGUCGCCGa-------GGCGCUU-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 20069 0.73 0.270933
Target:  5'- gGAGCgGCguGGCGGCUcCCGCG-GCGCg- -3'
miRNA:   3'- -CUCGgCG--UCGCCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 18780 0.73 0.258593
Target:  5'- cGGCCGaCAGCGcgaGCUCCGCGGcggcgGCGCg- -3'
miRNA:   3'- cUCGGC-GUCGC---CGAGGCGCU-----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 133057 0.73 0.258593
Target:  5'- -cGCCGC-GCgGGCcCCGCGgGGCGCUCg -3'
miRNA:   3'- cuCGGCGuCG-CCGaGGCGC-UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 49041 0.73 0.262246
Target:  5'- cGAGCCGUGGUGGCgcgcagcucacggCCGCGGGCGg-- -3'
miRNA:   3'- -CUCGGCGUCGCCGa------------GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 59515 0.73 0.252597
Target:  5'- aGGCCGCAcCGGCUUgGUGcgcuGCGCUCa -3'
miRNA:   3'- cUCGGCGUcGCCGAGgCGCu---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 108031 0.73 0.235295
Target:  5'- -cGCCGCGGCGGC-CgGCGGggcGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCGaGgCGCU---UGCGag -5'
6491 5' -61.5 NC_001847.1 + 115813 0.73 0.237543
Target:  5'- cGGCCGCGGCGcuuGCguuaacagccacggCCGCGGccGCGCUCg -3'
miRNA:   3'- cUCGGCGUCGC---CGa-------------GGCGCU--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 5218 0.73 0.235295
Target:  5'- -cGCCGCGGCGGC-CgGCGGggcGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCGaGgCGCU---UGCGag -5'
6491 5' -61.5 NC_001847.1 + 88886 0.73 0.240949
Target:  5'- cGGCgGCGGCGGCUcCCGCcggGGGCgGCUCc -3'
miRNA:   3'- cUCGgCGUCGCCGA-GGCG---CUUG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 48771 0.73 0.240949
Target:  5'- -cGCCGCcGCGGCccgccgccucgUCUGCGGGCGcCUCg -3'
miRNA:   3'- cuCGGCGuCGCCG-----------AGGCGCUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 133670 0.73 0.240949
Target:  5'- -cGCCGCuGCGGCUcugCCGCGGcggcaacguGCGCUa -3'
miRNA:   3'- cuCGGCGuCGCCGA---GGCGCU---------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 133966 0.73 0.240949
Target:  5'- cGGCCGCGGCGGUggccuUCUGCGcggccGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCG-----AGGCGCu----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 65110 0.73 0.269052
Target:  5'- cGAGCCGCGGCucggcuggcgguggGGCUCgGCuuccuGAGCGuCUCg -3'
miRNA:   3'- -CUCGGCGUCG--------------CCGAGgCG-----CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 94823 0.73 0.264705
Target:  5'- aGGGCCGCAGCcGCUuuGUGGucuuuACGCUa -3'
miRNA:   3'- -CUCGGCGUCGcCGAggCGCU-----UGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.