Results 101 - 120 of 707 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 6963 | 0.73 | 0.246716 |
Target: 5'- gGGGUCGCGGCGGCgcuuccgcCCGCGGGcCGCcCa -3' miRNA: 3'- -CUCGGCGUCGCCGa-------GGCGCUU-GCGaG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 3898 | 0.73 | 0.246716 |
Target: 5'- cGAGCCGUugcgcGCGGUggCGCGGACGCa- -3' miRNA: 3'- -CUCGGCGu----CGCCGagGCGCUUGCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 133966 | 0.73 | 0.240949 |
Target: 5'- cGGCCGCGGCGGUggccuUCUGCGcggccGCGCUg -3' miRNA: 3'- cUCGGCGUCGCCG-----AGGCGCu----UGCGAg -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 133670 | 0.73 | 0.240949 |
Target: 5'- -cGCCGCuGCGGCUcugCCGCGGcggcaacguGCGCUa -3' miRNA: 3'- cuCGGCGuCGCCGA---GGCGCU---------UGCGAg -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 34272 | 0.73 | 0.235295 |
Target: 5'- cGGCgCGCGGCGGCUggGCGccGCGCUCg -3' miRNA: 3'- cUCG-GCGUCGCCGAggCGCu-UGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 88886 | 0.73 | 0.240949 |
Target: 5'- cGGCgGCGGCGGCUcCCGCcggGGGCgGCUCc -3' miRNA: 3'- cUCGgCGUCGCCGA-GGCG---CUUG-CGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 106309 | 0.73 | 0.258593 |
Target: 5'- cGGCgGCAGCGGCgCCGUc-ACGCUCc -3' miRNA: 3'- cUCGgCGUCGCCGaGGCGcuUGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 18780 | 0.73 | 0.258593 |
Target: 5'- cGGCCGaCAGCGcgaGCUCCGCGGcggcgGCGCg- -3' miRNA: 3'- cUCGGC-GUCGC---CGAGGCGCU-----UGCGag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 43124 | 0.73 | 0.252597 |
Target: 5'- -uGcCCGCAGaCGGCgcgggcCCGCGGGCGCUg -3' miRNA: 3'- cuC-GGCGUC-GCCGa-----GGCGCUUGCGAg -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 48771 | 0.73 | 0.240949 |
Target: 5'- -cGCCGCcGCGGCccgccgccucgUCUGCGGGCGcCUCg -3' miRNA: 3'- cuCGGCGuCGCCG-----------AGGCGCUUGC-GAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 123731 | 0.73 | 0.270933 |
Target: 5'- cAGCgGCGGCGGCaUCgGCGGcGCGCUg -3' miRNA: 3'- cUCGgCGUCGCCG-AGgCGCU-UGCGAg -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 14457 | 0.73 | 0.270933 |
Target: 5'- cGGCCGC-GCuGCUCgGCGuGCGCUCc -3' miRNA: 3'- cUCGGCGuCGcCGAGgCGCuUGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 65110 | 0.73 | 0.269052 |
Target: 5'- cGAGCCGCGGCucggcuggcgguggGGCUCgGCuuccuGAGCGuCUCg -3' miRNA: 3'- -CUCGGCGUCG--------------CCGAGgCG-----CUUGC-GAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 88807 | 0.73 | 0.235295 |
Target: 5'- -uGCCGCcgacGCGGC-CCGCGGgcggccgugcuGCGCUCg -3' miRNA: 3'- cuCGGCGu---CGCCGaGGCGCU-----------UGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 49041 | 0.73 | 0.262246 |
Target: 5'- cGAGCCGUGGUGGCgcgcagcucacggCCGCGGGCGg-- -3' miRNA: 3'- -CUCGGCGUCGCCGa------------GGCGCUUGCgag -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 133057 | 0.73 | 0.258593 |
Target: 5'- -cGCCGC-GCgGGCcCCGCGgGGCGCUCg -3' miRNA: 3'- cuCGGCGuCG-CCGaGGCGC-UUGCGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 132565 | 0.72 | 0.277278 |
Target: 5'- cGGCCGCGGCGGC-CgCGCaGGCGCcCg -3' miRNA: 3'- cUCGGCGUCGCCGaG-GCGcUUGCGaG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 82127 | 0.72 | 0.283741 |
Target: 5'- cGAGCgCGCAGCGGCcgCCGCuguCgGCUCc -3' miRNA: 3'- -CUCG-GCGUCGCCGa-GGCGcuuG-CGAG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 83139 | 0.72 | 0.283741 |
Target: 5'- cGGCCGCcGCGGCgucgggcgcgUCCGCGAuGCGC-Cg -3' miRNA: 3'- cUCGGCGuCGCCG----------AGGCGCU-UGCGaG- -5' |
|||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 3705 | 0.72 | 0.277278 |
Target: 5'- cGGCCGCGggccccGCGGCcgCCGCGuAGCGCg- -3' miRNA: 3'- cUCGGCGU------CGCCGa-GGCGC-UUGCGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home