miRNA display CGI


Results 121 - 140 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 58234 0.72 0.297025
Target:  5'- cGGGCgGCAGCGGCggCgCGCGAcCGCc- -3'
miRNA:   3'- -CUCGgCGUCGCCGa-G-GCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 102033 0.72 0.290323
Target:  5'- -cGCCGCGGuCGGCcaggauggCGCGAGCGCUg -3'
miRNA:   3'- cuCGGCGUC-GCCGag------GCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 102549 0.72 0.297025
Target:  5'- cGGCCGCGaCGGCggCCGCGAcuagGCGCa- -3'
miRNA:   3'- cUCGGCGUcGCCGa-GGCGCU----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 105839 0.72 0.310785
Target:  5'- cGGGCCGCgccgAGCaGCUCgGCGGcccggagcacGCGCUCc -3'
miRNA:   3'- -CUCGGCG----UCGcCGAGgCGCU----------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 3705 0.72 0.277278
Target:  5'- cGGCCGCGggccccGCGGCcgCCGCGuAGCGCg- -3'
miRNA:   3'- cUCGGCGU------CGCCGa-GGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 34784 0.72 0.310785
Target:  5'- cGGCCGCGgcgcGCGGCUacgacCCGCGGcCGCUg -3'
miRNA:   3'- cUCGGCGU----CGCCGA-----GGCGCUuGCGAg -5'
6491 5' -61.5 NC_001847.1 + 81185 0.72 0.310785
Target:  5'- aGGGCuCGCGGCGGCgccagCCGgCGcGCGCg- -3'
miRNA:   3'- -CUCG-GCGUCGCCGa----GGC-GCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 36153 0.72 0.310785
Target:  5'- cGGGCCuGCAGCGGCUgCagGC-AACGCUUg -3'
miRNA:   3'- -CUCGG-CGUCGCCGAgG--CGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 132219 0.72 0.303845
Target:  5'- cGGCCGCgcuGGCGGCgcggaCCGUGGcccCGCUCg -3'
miRNA:   3'- cUCGGCG---UCGCCGa----GGCGCUu--GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 58746 0.72 0.303845
Target:  5'- cGGCCcgacaGCGGCGGCggCCGCGAcgguCGCUg -3'
miRNA:   3'- cUCGG-----CGUCGCCGa-GGCGCUu---GCGAg -5'
6491 5' -61.5 NC_001847.1 + 36439 0.72 0.297025
Target:  5'- -cGCCGUAGCGGCg-CGCGcGGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCGagGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 101379 0.72 0.310785
Target:  5'- -cGCCGCGGgGGCUgcCCGCG-GCGC-Cg -3'
miRNA:   3'- cuCGGCGUCgCCGA--GGCGCuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 24407 0.72 0.297025
Target:  5'- cGGCCGUGGCGGCcgCCGUGGACagaGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa-GGCGCUUG---CGag -5'
6491 5' -61.5 NC_001847.1 + 132121 0.72 0.290323
Target:  5'- cGAGCUGCucggcGCGGC-CCGCG-ACGCg- -3'
miRNA:   3'- -CUCGGCGu----CGCCGaGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 100931 0.72 0.283741
Target:  5'- uAGCCGCGGCGGUgcugguagccgCCGCGGuaacagcgGgGCUCg -3'
miRNA:   3'- cUCGGCGUCGCCGa----------GGCGCU--------UgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 50045 0.72 0.283741
Target:  5'- cGGGgCGCGGUGGCggCCGCGGguccGCGCg- -3'
miRNA:   3'- -CUCgGCGUCGCCGa-GGCGCU----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 25534 0.72 0.283741
Target:  5'- uGGCgCGCAcCGGCUCCGCGAccucggacacgaGCGCg- -3'
miRNA:   3'- cUCG-GCGUcGCCGAGGCGCU------------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 65750 0.72 0.277278
Target:  5'- aGAG-CGUGGUGGC-CCGCGGGCGCa- -3'
miRNA:   3'- -CUCgGCGUCGCCGaGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 2357 0.72 0.276638
Target:  5'- cGGGCCGCAugagguccagucGCGcGC-CCGCGAagacggcggugacGCGCUCg -3'
miRNA:   3'- -CUCGGCGU------------CGC-CGaGGCGCU-------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 71848 0.72 0.303845
Target:  5'- aGAGCaCGCcuccccAGCGGUggaagcggCCGCGAGCGCg- -3'
miRNA:   3'- -CUCG-GCG------UCGCCGa-------GGCGCUUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.