miRNA display CGI


Results 141 - 160 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 54118 0.72 0.303845
Target:  5'- cAGuCCGCGGCGGCgUCGCccauGCGCUCc -3'
miRNA:   3'- cUC-GGCGUCGCCGaGGCGcu--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 29406 0.72 0.303845
Target:  5'- cGGCCGCgcuGGCGGCgcggaCCGUGGcccCGCUCg -3'
miRNA:   3'- cUCGGCG---UCGCCGa----GGCGCUu--GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 132565 0.72 0.277278
Target:  5'- cGGCCGCGGCGGC-CgCGCaGGCGCcCg -3'
miRNA:   3'- cUCGGCGUCGCCGaG-GCGcUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 82127 0.72 0.283741
Target:  5'- cGAGCgCGCAGCGGCcgCCGCuguCgGCUCc -3'
miRNA:   3'- -CUCG-GCGUCGCCGa-GGCGcuuG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 83139 0.72 0.283741
Target:  5'- cGGCCGCcGCGGCgucgggcgcgUCCGCGAuGCGC-Cg -3'
miRNA:   3'- cUCGGCGuCGCCG----------AGGCGCU-UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 11754 0.72 0.290323
Target:  5'- cAGCCGCAcgaGGCUUugUGUGAGCGCUCc -3'
miRNA:   3'- cUCGGCGUcg-CCGAG--GCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 29308 0.72 0.290323
Target:  5'- cGAGCUGCucggcGCGGC-CCGCG-ACGCg- -3'
miRNA:   3'- -CUCGGCGu----CGCCGaGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 102033 0.72 0.290323
Target:  5'- -cGCCGCGGuCGGCcaggauggCGCGAGCGCUg -3'
miRNA:   3'- cuCGGCGUC-GCCGag------GCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 100931 0.72 0.283741
Target:  5'- uAGCCGCGGCGGUgcugguagccgCCGCGGuaacagcgGgGCUCg -3'
miRNA:   3'- cUCGGCGUCGCCGa----------GGCGCU--------UgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 102549 0.72 0.297025
Target:  5'- cGGCCGCGaCGGCggCCGCGAcuagGCGCa- -3'
miRNA:   3'- cUCGGCGUcGCCGa-GGCGCU----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 71848 0.72 0.303845
Target:  5'- aGAGCaCGCcuccccAGCGGUggaagcggCCGCGAGCGCg- -3'
miRNA:   3'- -CUCG-GCG------UCGCCGa-------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 55165 0.71 0.350334
Target:  5'- -cGCCGCgcAGCGGCucgccuggcaauauaUCCGCGAGCucGUUCu -3'
miRNA:   3'- cuCGGCG--UCGCCG---------------AGGCGCUUG--CGAG- -5'
6491 5' -61.5 NC_001847.1 + 5391 0.71 0.317846
Target:  5'- cGAGCgGcCGGCGGCacaggCCGC--GCGCUCa -3'
miRNA:   3'- -CUCGgC-GUCGCCGa----GGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 128747 0.71 0.337507
Target:  5'- uGGCCGUggagagaauggAGCGGCUagggccaaagggggCCGCGGGCGgUCa -3'
miRNA:   3'- cUCGGCG-----------UCGCCGA--------------GGCGCUUGCgAG- -5'
6491 5' -61.5 NC_001847.1 + 129936 0.71 0.354943
Target:  5'- cGGCCGCcGCGGCgagagagCCGgCGAGgGCUUc -3'
miRNA:   3'- cUCGGCGuCGCCGa------GGC-GCUUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 115761 0.71 0.354943
Target:  5'- gGAGCCGaCGGggagcCGGCUCgGCcaGAGCGUUCg -3'
miRNA:   3'- -CUCGGC-GUC-----GCCGAGgCG--CUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 105187 0.71 0.354943
Target:  5'- cGGCgGCGGCGGCUuuUCGCcGGCGcCUCg -3'
miRNA:   3'- cUCGgCGUCGCCGA--GGCGcUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 35342 0.71 0.354943
Target:  5'- gGAGCUGCcgAGCgaGGCUCugauCGCGAGCGCg- -3'
miRNA:   3'- -CUCGGCG--UCG--CCGAG----GCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 107438 0.71 0.354943
Target:  5'- -cGgCGCgGGCGGC-CCGCcGGCGCUCg -3'
miRNA:   3'- cuCgGCG-UCGCCGaGGCGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 27160 0.71 0.354172
Target:  5'- cAGCCGCGGCGGCcagcccaauaaugUCgGCgGggUGCUUc -3'
miRNA:   3'- cUCGGCGUCGCCG-------------AGgCG-CuuGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.