miRNA display CGI


Results 61 - 80 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 29307 0.74 0.208678
Target:  5'- aGGCCGCGGCcGCggacaagcgagCCGCGAGCGCg- -3'
miRNA:   3'- cUCGGCGUCGcCGa----------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 2448 0.74 0.213785
Target:  5'- cAGCCGCAGCGaGCUCCcgauCGAGCGggCg -3'
miRNA:   3'- cUCGGCGUCGC-CGAGGc---GCUUGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 49913 0.74 0.213785
Target:  5'- cGGCCGCGGUGGCgCUGCGcguGCGCa- -3'
miRNA:   3'- cUCGGCGUCGCCGaGGCGCu--UGCGag -5'
6491 5' -61.5 NC_001847.1 + 126040 0.74 0.218999
Target:  5'- aGGGCCuGCGGUGGCUCCGaGAGCGg-- -3'
miRNA:   3'- -CUCGG-CGUCGCCGAGGCgCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 73138 0.74 0.218999
Target:  5'- cGGCCGCAG-GGCcCCGCGc-CGCUCu -3'
miRNA:   3'- cUCGGCGUCgCCGaGGCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 73707 0.74 0.218999
Target:  5'- -cGCCGCgcccGGCGGCgcggCCGCGGGCGUc- -3'
miRNA:   3'- cuCGGCG----UCGCCGa---GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 43532 0.74 0.221115
Target:  5'- cAGCCGCAGCcGCgaggagaagcgccgCCGCGAGCGC-Cg -3'
miRNA:   3'- cUCGGCGUCGcCGa-------------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 92746 0.74 0.223784
Target:  5'- cAGCgCGCGcgaacauGCGGCUCCGCGA--GCUCa -3'
miRNA:   3'- cUCG-GCGU-------CGCCGAGGCGCUugCGAG- -5'
6491 5' -61.5 NC_001847.1 + 54254 0.74 0.224321
Target:  5'- -cGCUGCGGUGGCgcCCGaCGAGCgGCUCg -3'
miRNA:   3'- cuCGGCGUCGCCGa-GGC-GCUUG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 104732 0.74 0.229753
Target:  5'- aGAGCCcgccgcggcGCGGCGGCcacucgggCCGCcGGCGCUCg -3'
miRNA:   3'- -CUCGG---------CGUCGCCGa-------GGCGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 16061 0.74 0.229753
Target:  5'- cGGCCGCGGCGcCUCUGCuGGGCGcCUCc -3'
miRNA:   3'- cUCGGCGUCGCcGAGGCG-CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 104297 0.74 0.229753
Target:  5'- aGAGCCGCAGCGGCggcgCCuCGGgguagagccGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGCCGa---GGcGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 33124 0.74 0.229753
Target:  5'- cGA-CCGCGGCGGCg--GCGAGCGCUUc -3'
miRNA:   3'- -CUcGGCGUCGCCGaggCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 15030 0.74 0.229753
Target:  5'- cGAGCCGCggccgccgGGCGaGCUgUGCGAGCGC-Ca -3'
miRNA:   3'- -CUCGGCG--------UCGC-CGAgGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 1484 0.74 0.229753
Target:  5'- aGAGCCGCAGCGGCggcgCCuCGGgguagagccGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGCCGa---GGcGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 113940 0.74 0.229753
Target:  5'- cGGUCGCGGCGGCgucuccuacgCCGCcGGGCGCgUCg -3'
miRNA:   3'- cUCGGCGUCGCCGa---------GGCG-CUUGCG-AG- -5'
6491 5' -61.5 NC_001847.1 + 1919 0.74 0.229753
Target:  5'- aGAGCCcgccgcggcGCGGCGGCcacucgggCCGCcGGCGCUCg -3'
miRNA:   3'- -CUCGG---------CGUCGCCGa-------GGCGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 88807 0.73 0.235295
Target:  5'- -uGCCGCcgacGCGGC-CCGCGGgcggccgugcuGCGCUCg -3'
miRNA:   3'- cuCGGCGu---CGCCGaGGCGCU-----------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 34272 0.73 0.235295
Target:  5'- cGGCgCGCGGCGGCUggGCGccGCGCUCg -3'
miRNA:   3'- cUCG-GCGUCGCCGAggCGCu-UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 108031 0.73 0.235295
Target:  5'- -cGCCGCGGCGGC-CgGCGGggcGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCGaGgCGCU---UGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.