miRNA display CGI


Results 81 - 100 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 5218 0.73 0.235295
Target:  5'- -cGCCGCGGCGGC-CgGCGGggcGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCGaGgCGCU---UGCGag -5'
6491 5' -61.5 NC_001847.1 + 115813 0.73 0.237543
Target:  5'- cGGCCGCGGCGcuuGCguuaacagccacggCCGCGGccGCGCUCg -3'
miRNA:   3'- cUCGGCGUCGC---CGa-------------GGCGCU--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 48771 0.73 0.240949
Target:  5'- -cGCCGCcGCGGCccgccgccucgUCUGCGGGCGcCUCg -3'
miRNA:   3'- cuCGGCGuCGCCG-----------AGGCGCUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 31153 0.73 0.240949
Target:  5'- cGGCCGCGGCGGUggccuUCUGCGcggccGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCG-----AGGCGCu----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 30857 0.73 0.240949
Target:  5'- -cGCCGCuGCGGCUcugCCGCGGcggcaacguGCGCUa -3'
miRNA:   3'- cuCGGCGuCGCCGA---GGCGCU---------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 133670 0.73 0.240949
Target:  5'- -cGCCGCuGCGGCUcugCCGCGGcggcaacguGCGCUa -3'
miRNA:   3'- cuCGGCGuCGCCGA---GGCGCU---------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 133966 0.73 0.240949
Target:  5'- cGGCCGCGGCGGUggccuUCUGCGcggccGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCG-----AGGCGCu----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 88886 0.73 0.240949
Target:  5'- cGGCgGCGGCGGCUcCCGCcggGGGCgGCUCc -3'
miRNA:   3'- cUCGgCGUCGCCGA-GGCG---CUUG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 3898 0.73 0.246716
Target:  5'- cGAGCCGUugcgcGCGGUggCGCGGACGCa- -3'
miRNA:   3'- -CUCGGCGu----CGCCGagGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 124750 0.73 0.246716
Target:  5'- aGGGCCGUcauaaAGCGGCcccgCCGCGAGCGg-- -3'
miRNA:   3'- -CUCGGCG-----UCGCCGa---GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 6963 0.73 0.246716
Target:  5'- gGGGUCGCGGCGGCgcuuccgcCCGCGGGcCGCcCa -3'
miRNA:   3'- -CUCGGCGUCGCCGa-------GGCGCUU-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 55340 0.73 0.250231
Target:  5'- uGGCCGCucGCGGCggugcugaacgcgCCGCGGGCGC-Cg -3'
miRNA:   3'- cUCGGCGu-CGCCGa------------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 104343 0.73 0.251412
Target:  5'- -uGCCGCGGCGGCagacgcggcggcgUCCGCGcccgcagacgcgcGGCGCUg -3'
miRNA:   3'- cuCGGCGUCGCCG-------------AGGCGC-------------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 56331 0.73 0.252004
Target:  5'- aGGCCGUaaaGGCGaagggguccacauGCUCCGCGGGCGCg- -3'
miRNA:   3'- cUCGGCG---UCGC-------------CGAGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 58086 0.73 0.252597
Target:  5'- -cGCCGCAGCGGgUgCCGCGc-CGCUa -3'
miRNA:   3'- cuCGGCGUCGCCgA-GGCGCuuGCGAg -5'
6491 5' -61.5 NC_001847.1 + 31429 0.73 0.252597
Target:  5'- cAGCCGCGGCGGacgUCGCuGGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCga-GGCGcUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 59515 0.73 0.252597
Target:  5'- aGGCCGCAcCGGCUUgGUGcgcuGCGCUCa -3'
miRNA:   3'- cUCGGCGUcGCCGAGgCGCu---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 43124 0.73 0.252597
Target:  5'- -uGcCCGCAGaCGGCgcgggcCCGCGGGCGCUg -3'
miRNA:   3'- cuC-GGCGUC-GCCGa-----GGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 105682 0.73 0.252597
Target:  5'- cGGCCGCgGGCGGCgcuucggCCGCGGGCGg-- -3'
miRNA:   3'- cUCGGCG-UCGCCGa------GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 38580 0.73 0.252597
Target:  5'- gGAGCCGCGGaGGCUCCugGCguuGAGCGCg- -3'
miRNA:   3'- -CUCGGCGUCgCCGAGG--CG---CUUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.