miRNA display CGI


Results 101 - 120 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 96813 0.73 0.252597
Target:  5'- gGGGCgCGCAGCGGCggcgaCCGCGcgGGCGUUg -3'
miRNA:   3'- -CUCG-GCGUCGCCGa----GGCGC--UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 59697 0.73 0.258593
Target:  5'- aGGGCaacaGCAGCcaGGaCUCCGCGGucgcgaucGCGCUCg -3'
miRNA:   3'- -CUCGg---CGUCG--CC-GAGGCGCU--------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 30244 0.73 0.258593
Target:  5'- -cGCCGC-GCgGGCcCCGCGgGGCGCUCg -3'
miRNA:   3'- cuCGGCGuCG-CCGaGGCGC-UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 106309 0.73 0.258593
Target:  5'- cGGCgGCAGCGGCgCCGUc-ACGCUCc -3'
miRNA:   3'- cUCGgCGUCGCCGaGGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 133057 0.73 0.258593
Target:  5'- -cGCCGC-GCgGGCcCCGCGgGGCGCUCg -3'
miRNA:   3'- cuCGGCGuCG-CCGaGGCGC-UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 28465 0.73 0.258593
Target:  5'- uGGCCGCcGUGGCacgacgcgCCGCGGACGC-Cg -3'
miRNA:   3'- cUCGGCGuCGCCGa-------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 129041 0.73 0.258593
Target:  5'- -cGCCGCGccucGCGGgcgucucgcgcCUCCGCGAGCGCg- -3'
miRNA:   3'- cuCGGCGU----CGCC-----------GAGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3496 0.73 0.258593
Target:  5'- cGGCgGCAGCGGCgCCGUc-ACGCUCc -3'
miRNA:   3'- cUCGgCGUCGCCGaGGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 121716 0.73 0.258593
Target:  5'- cAGCCaGCgcaGGCcccGCUCCGCGAGCGCUa -3'
miRNA:   3'- cUCGG-CG---UCGc--CGAGGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 18780 0.73 0.258593
Target:  5'- cGGCCGaCAGCGcgaGCUCCGCGGcggcgGCGCg- -3'
miRNA:   3'- cUCGGC-GUCGC---CGAGGCGCU-----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 49041 0.73 0.262246
Target:  5'- cGAGCCGUGGUGGCgcgcagcucacggCCGCGGGCGg-- -3'
miRNA:   3'- -CUCGGCGUCGCCGa------------GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 94823 0.73 0.264705
Target:  5'- aGGGCCGCAGCcGCUuuGUGGucuuuACGCUa -3'
miRNA:   3'- -CUCGGCGUCGcCGAggCGCU-----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 65110 0.73 0.269052
Target:  5'- cGAGCCGCGGCucggcuggcgguggGGCUCgGCuuccuGAGCGuCUCg -3'
miRNA:   3'- -CUCGGCGUCG--------------CCGAGgCG-----CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 20069 0.73 0.270933
Target:  5'- gGAGCgGCguGGCGGCUcCCGCG-GCGCg- -3'
miRNA:   3'- -CUCGgCG--UCGCCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 123731 0.73 0.270933
Target:  5'- cAGCgGCGGCGGCaUCgGCGGcGCGCUg -3'
miRNA:   3'- cUCGgCGUCGCCG-AGgCGCU-UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 14457 0.73 0.270933
Target:  5'- cGGCCGC-GCuGCUCgGCGuGCGCUCc -3'
miRNA:   3'- cUCGGCGuCGcCGAGgCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 2357 0.72 0.276638
Target:  5'- cGGGCCGCAugagguccagucGCGcGC-CCGCGAagacggcggugacGCGCUCg -3'
miRNA:   3'- -CUCGGCGU------------CGC-CGaGGCGCU-------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 3705 0.72 0.277278
Target:  5'- cGGCCGCGggccccGCGGCcgCCGCGuAGCGCg- -3'
miRNA:   3'- cUCGGCGU------CGCCGa-GGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 132565 0.72 0.277278
Target:  5'- cGGCCGCGGCGGC-CgCGCaGGCGCcCg -3'
miRNA:   3'- cUCGGCGUCGCCGaG-GCGcUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 65750 0.72 0.277278
Target:  5'- aGAG-CGUGGUGGC-CCGCGGGCGCa- -3'
miRNA:   3'- -CUCgGCGUCGCCGaGGCGCUUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.