Results 121 - 140 of 707 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 132565 | 0.72 | 0.277278 |
Target: 5'- cGGCCGCGGCGGC-CgCGCaGGCGCcCg -3' miRNA: 3'- cUCGGCGUCGCCGaG-GCGcUUGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 96929 | 0.72 | 0.28309 |
Target: 5'- aGGCgCGCGGCccgGGcCUCCGCGGgcggcagGCGCUCu -3' miRNA: 3'- cUCG-GCGUCG---CC-GAGGCGCU-------UGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 33509 | 0.72 | 0.283741 |
Target: 5'- cGGGCgGCGGCgGGCgccgCCGCGGAgGCg- -3' miRNA: 3'- -CUCGgCGUCG-CCGa---GGCGCUUgCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 83139 | 0.72 | 0.283741 |
Target: 5'- cGGCCGCcGCGGCgucgggcgcgUCCGCGAuGCGC-Cg -3' miRNA: 3'- cUCGGCGuCGCCG----------AGGCGCU-UGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 82127 | 0.72 | 0.283741 |
Target: 5'- cGAGCgCGCAGCGGCcgCCGCuguCgGCUCc -3' miRNA: 3'- -CUCG-GCGUCGCCGa-GGCGcuuG-CGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 100931 | 0.72 | 0.283741 |
Target: 5'- uAGCCGCGGCGGUgcugguagccgCCGCGGuaacagcgGgGCUCg -3' miRNA: 3'- cUCGGCGUCGCCGa----------GGCGCU--------UgCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 25534 | 0.72 | 0.283741 |
Target: 5'- uGGCgCGCAcCGGCUCCGCGAccucggacacgaGCGCg- -3' miRNA: 3'- cUCG-GCGUcGCCGAGGCGCU------------UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 50045 | 0.72 | 0.283741 |
Target: 5'- cGGGgCGCGGUGGCggCCGCGGguccGCGCg- -3' miRNA: 3'- -CUCgGCGUCGCCGa-GGCGCU----UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 11754 | 0.72 | 0.290323 |
Target: 5'- cAGCCGCAcgaGGCUUugUGUGAGCGCUCc -3' miRNA: 3'- cUCGGCGUcg-CCGAG--GCGCUUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 132121 | 0.72 | 0.290323 |
Target: 5'- cGAGCUGCucggcGCGGC-CCGCG-ACGCg- -3' miRNA: 3'- -CUCGGCGu----CGCCGaGGCGCuUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 102033 | 0.72 | 0.290323 |
Target: 5'- -cGCCGCGGuCGGCcaggauggCGCGAGCGCUg -3' miRNA: 3'- cuCGGCGUC-GCCGag------GCGCUUGCGAg -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 29308 | 0.72 | 0.290323 |
Target: 5'- cGAGCUGCucggcGCGGC-CCGCG-ACGCg- -3' miRNA: 3'- -CUCGGCGu----CGCCGaGGCGCuUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 24407 | 0.72 | 0.297025 |
Target: 5'- cGGCCGUGGCGGCcgCCGUGGACagaGCg- -3' miRNA: 3'- cUCGGCGUCGCCGa-GGCGCUUG---CGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 102549 | 0.72 | 0.297025 |
Target: 5'- cGGCCGCGaCGGCggCCGCGAcuagGCGCa- -3' miRNA: 3'- cUCGGCGUcGCCGa-GGCGCU----UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 58234 | 0.72 | 0.297025 |
Target: 5'- cGGGCgGCAGCGGCggCgCGCGAcCGCc- -3' miRNA: 3'- -CUCGgCGUCGCCGa-G-GCGCUuGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2984 | 0.72 | 0.297025 |
Target: 5'- -cGCCGgGGcCGGCgcuggagCCGCGcGCGCUCc -3' miRNA: 3'- cuCGGCgUC-GCCGa------GGCGCuUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 36439 | 0.72 | 0.297025 |
Target: 5'- -cGCCGUAGCGGCg-CGCGcGGCGCg- -3' miRNA: 3'- cuCGGCGUCGCCGagGCGC-UUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 29406 | 0.72 | 0.303845 |
Target: 5'- cGGCCGCgcuGGCGGCgcggaCCGUGGcccCGCUCg -3' miRNA: 3'- cUCGGCG---UCGCCGa----GGCGCUu--GCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 132219 | 0.72 | 0.303845 |
Target: 5'- cGGCCGCgcuGGCGGCgcggaCCGUGGcccCGCUCg -3' miRNA: 3'- cUCGGCG---UCGCCGa----GGCGCUu--GCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 54118 | 0.72 | 0.303845 |
Target: 5'- cAGuCCGCGGCGGCgUCGCccauGCGCUCc -3' miRNA: 3'- cUC-GGCGUCGCCGaGGCGcu--UGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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