miRNA display CGI


Results 141 - 160 of 707 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 58746 0.72 0.303845
Target:  5'- cGGCCcgacaGCGGCGGCggCCGCGAcgguCGCUg -3'
miRNA:   3'- cUCGG-----CGUCGCCGa-GGCGCUu---GCGAg -5'
6491 5' -61.5 NC_001847.1 + 29406 0.72 0.303845
Target:  5'- cGGCCGCgcuGGCGGCgcggaCCGUGGcccCGCUCg -3'
miRNA:   3'- cUCGGCG---UCGCCGa----GGCGCUu--GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 71848 0.72 0.303845
Target:  5'- aGAGCaCGCcuccccAGCGGUggaagcggCCGCGAGCGCg- -3'
miRNA:   3'- -CUCG-GCG------UCGCCGa-------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 13338 0.72 0.310785
Target:  5'- cGGGCgGCgAGCaGGCgcCCGCGAggACGCUCc -3'
miRNA:   3'- -CUCGgCG-UCG-CCGa-GGCGCU--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 34784 0.72 0.310785
Target:  5'- cGGCCGCGgcgcGCGGCUacgacCCGCGGcCGCUg -3'
miRNA:   3'- cUCGGCGU----CGCCGA-----GGCGCUuGCGAg -5'
6491 5' -61.5 NC_001847.1 + 80777 0.72 0.310785
Target:  5'- -cGCCGCAGCaGCUCgCGC-AGCGCg- -3'
miRNA:   3'- cuCGGCGUCGcCGAG-GCGcUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 81185 0.72 0.310785
Target:  5'- aGGGCuCGCGGCGGCgccagCCGgCGcGCGCg- -3'
miRNA:   3'- -CUCG-GCGUCGCCGa----GGC-GCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 3026 0.72 0.310785
Target:  5'- cGGGCCGCgccgAGCaGCUCgGCGGcccggagcacGCGCUCc -3'
miRNA:   3'- -CUCGGCG----UCGcCGAGgCGCU----------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 36153 0.72 0.310785
Target:  5'- cGGGCCuGCAGCGGCUgCagGC-AACGCUUg -3'
miRNA:   3'- -CUCGG-CGUCGCCGAgG--CGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 101379 0.72 0.310785
Target:  5'- -cGCCGCGGgGGCUgcCCGCG-GCGC-Cg -3'
miRNA:   3'- cuCGGCGUCgCCGA--GGCGCuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 105839 0.72 0.310785
Target:  5'- cGGGCCGCgccgAGCaGCUCgGCGGcccggagcacGCGCUCc -3'
miRNA:   3'- -CUCGGCG----UCGcCGAGgCGCU----------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 31443 0.71 0.317846
Target:  5'- cGGCCGCGGCGGCcCCggcGCGGGcCGC-Cg -3'
miRNA:   3'- cUCGGCGUCGCCGaGG---CGCUU-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 5391 0.71 0.317846
Target:  5'- cGAGCgGcCGGCGGCacaggCCGC--GCGCUCa -3'
miRNA:   3'- -CUCGgC-GUCGCCGa----GGCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 45626 0.71 0.317846
Target:  5'- -uGCCGCccGGCGGCagCGCGGcgcGCGCUg -3'
miRNA:   3'- cuCGGCG--UCGCCGagGCGCU---UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 38954 0.71 0.317846
Target:  5'- gGGGCCGCgagcgccauGGCGGCggCCGCGGcgGgGCUUa -3'
miRNA:   3'- -CUCGGCG---------UCGCCGa-GGCGCU--UgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 134256 0.71 0.317846
Target:  5'- cGGCCGCGGCGGCcCCggcGCGGGcCGC-Cg -3'
miRNA:   3'- cUCGGCGUCGCCGaGG---CGCUU-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 53360 0.71 0.317846
Target:  5'- -cGCUGCuGGCGGCcgcgggcaCCGCGAGCGCg- -3'
miRNA:   3'- cuCGGCG-UCGCCGa-------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 102993 0.71 0.317846
Target:  5'- -cGCCGUcGCGGCgUgCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGuCGCCG-AgGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 11566 0.71 0.322859
Target:  5'- cAGCgGguGCGGCUgCCGCGGugccgguugcuucuGCGCUg -3'
miRNA:   3'- cUCGgCguCGCCGA-GGCGCU--------------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 126513 0.71 0.324302
Target:  5'- cGAGuCCGCAGCGGCcgcUCCcccggcggggcuuGCGcugcggcuGACGCUCg -3'
miRNA:   3'- -CUC-GGCGUCGCCG---AGG-------------CGC--------UUGCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.