miRNA display CGI


Results 161 - 180 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 83531 0.71 0.325026
Target:  5'- aAGCC-CAGCGGC-CCGCugaGAAUGUUCa -3'
miRNA:   3'- cUCGGcGUCGCCGaGGCG---CUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 86383 0.71 0.325026
Target:  5'- cGGGCCGCGGCGGCgggCGCGcg-GCUg -3'
miRNA:   3'- -CUCGGCGUCGCCGag-GCGCuugCGAg -5'
6491 5' -61.5 NC_001847.1 + 31303 0.71 0.325026
Target:  5'- -uGCUGCuGCGGCgcgCCGCGGGCGg-- -3'
miRNA:   3'- cuCGGCGuCGCCGa--GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 34083 0.71 0.325026
Target:  5'- gGAGCgCGUGGCGGCcgCCGUGGcucGCGCg- -3'
miRNA:   3'- -CUCG-GCGUCGCCGa-GGCGCU---UGCGag -5'
6491 5' -61.5 NC_001847.1 + 92214 0.71 0.325026
Target:  5'- cGGCCGCuugGGCGGC-CagcaGCGcGCGCUCu -3'
miRNA:   3'- cUCGGCG---UCGCCGaGg---CGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 134116 0.71 0.325026
Target:  5'- -uGCUGCuGCGGCgcgCCGCGGGCGg-- -3'
miRNA:   3'- cuCGGCGuCGCCGa--GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 46855 0.71 0.325026
Target:  5'- cGAGCCGCGuCGGC-CCagcagGCGAaGCGCUCc -3'
miRNA:   3'- -CUCGGCGUcGCCGaGG-----CGCU-UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 25935 0.71 0.330123
Target:  5'- uGGCCGUggagagauggAGCGGCUagggccaaagggggCCGCGGGCGgUCa -3'
miRNA:   3'- cUCGGCG----------UCGCCGA--------------GGCGCUUGCgAG- -5'
6491 5' -61.5 NC_001847.1 + 114291 0.71 0.33159
Target:  5'- -cGCCGCAGCGcagacucGCUuuGCGAccGCGCg- -3'
miRNA:   3'- cuCGGCGUCGC-------CGAggCGCU--UGCGag -5'
6491 5' -61.5 NC_001847.1 + 74261 0.71 0.332326
Target:  5'- -cGCCGCugcuGgGGC-CCGCGcgcGCGCUCg -3'
miRNA:   3'- cuCGGCGu---CgCCGaGGCGCu--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 61376 0.71 0.332326
Target:  5'- -cGCuCGUAGCGGC-CCGCGccgccgcccGGCGCUUg -3'
miRNA:   3'- cuCG-GCGUCGCCGaGGCGC---------UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 130761 0.71 0.332326
Target:  5'- uGGGCCGCGGCGcGCgcgCuCGCGGuCGCg- -3'
miRNA:   3'- -CUCGGCGUCGC-CGa--G-GCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 27948 0.71 0.332326
Target:  5'- uGGGCCGCGGCGcGCgcgCuCGCGGuCGCg- -3'
miRNA:   3'- -CUCGGCGUCGC-CGa--G-GCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 20469 0.71 0.332326
Target:  5'- aGGCCGCGGCGGCUgucgacguUgGCGAggaagACgGCUCg -3'
miRNA:   3'- cUCGGCGUCGCCGA--------GgCGCU-----UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 76409 0.71 0.332326
Target:  5'- gGGGCCGCGGCGGgggcaccCCGCGGcgggaGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGCCga-----GGCGCU-----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 105800 0.71 0.332326
Target:  5'- gGGGCCGCGcGCuGGagCCGCGcGCGCUCc -3'
miRNA:   3'- -CUCGGCGU-CG-CCgaGGCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 128747 0.71 0.337507
Target:  5'- uGGCCGUggagagaauggAGCGGCUagggccaaagggggCCGCGGGCGgUCa -3'
miRNA:   3'- cUCGGCG-----------UCGCCGA--------------GGCGCUUGCgAG- -5'
6491 5' -61.5 NC_001847.1 + 35384 0.71 0.338252
Target:  5'- aAGCCGCGGCGGCUCacugccgggccgGCcAACGCa- -3'
miRNA:   3'- cUCGGCGUCGCCGAGg-----------CGcUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 37001 0.71 0.338252
Target:  5'- cGAGCgGCGGCGGCgcgcucgagcugacgCcCGCGGaccuggucguggccGCGCUCa -3'
miRNA:   3'- -CUCGgCGUCGCCGa--------------G-GCGCU--------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 30555 0.71 0.339746
Target:  5'- -cGUCGC-GCGGCUCCGCG-GCGUc- -3'
miRNA:   3'- cuCGGCGuCGCCGAGGCGCuUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.