miRNA display CGI


Results 81 - 100 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 6765 0.66 0.609873
Target:  5'- cGGCCGguGCGaggcgccagcuGCUCCGUGGccaccagcaGCGCg- -3'
miRNA:   3'- cUCGGCguCGC-----------CGAGGCGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 103298 0.66 0.609873
Target:  5'- cAGCgGCGGCGGCggggcggCCGC--GCGC-Ca -3'
miRNA:   3'- cUCGgCGUCGCCGa------GGCGcuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 89534 0.66 0.608871
Target:  5'- cGGGCgGCAGCgacgggucagauuGGC-CCGCGGGcCGCg- -3'
miRNA:   3'- -CUCGgCGUCG-------------CCGaGGCGCUU-GCGag -5'
6491 5' -61.5 NC_001847.1 + 32997 0.66 0.604865
Target:  5'- cGGGCCGCGccgccguggucgcGCGGagugccgccgcccuCUCCGCcGAgcuggacGCGCUCg -3'
miRNA:   3'- -CUCGGCGU-------------CGCC--------------GAGGCG-CU-------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 32918 0.66 0.603864
Target:  5'- gGGGCCGCggacgggaggaggccGGCGGCggggCCGgGGGgGCg- -3'
miRNA:   3'- -CUCGGCG---------------UCGCCGa---GGCgCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 99642 0.66 0.599862
Target:  5'- cGGCgCGCGccGUGGcCUCCGCGcGCGC-Cg -3'
miRNA:   3'- cUCG-GCGU--CGCC-GAGGCGCuUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 3809 0.66 0.599862
Target:  5'- -uGCCgGCAcGgGGCgucggCCGCGAGCGUg- -3'
miRNA:   3'- cuCGG-CGU-CgCCGa----GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 98152 0.66 0.599862
Target:  5'- -cGCCGCcGCcGCUCggCGCGGGCccGCUCg -3'
miRNA:   3'- cuCGGCGuCGcCGAG--GCGCUUG--CGAG- -5'
6491 5' -61.5 NC_001847.1 + 69423 0.66 0.599862
Target:  5'- -cGCCGCcccGGCgGGCUCUGggaUGAACGCg- -3'
miRNA:   3'- cuCGGCG---UCG-CCGAGGC---GCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 53804 0.66 0.599862
Target:  5'- -uGCCGCAcguGCaaGGCgugUCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGU---CG--CCGa--GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 100553 0.66 0.599862
Target:  5'- gGAGCCgGCcGCGGCgauuauugCCGCcaGGCGCUg -3'
miRNA:   3'- -CUCGG-CGuCGCCGa-------GGCGc-UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 92645 0.66 0.599862
Target:  5'- -cGCC-CGGCGGUUUCGCccgcAGCGCUUc -3'
miRNA:   3'- cuCGGcGUCGCCGAGGCGc---UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 35734 0.66 0.599862
Target:  5'- uGGCCGCGGUGGaguggCUGCagcaagcGCGCUCu -3'
miRNA:   3'- cUCGGCGUCGCCga---GGCGcu-----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 38297 0.66 0.599862
Target:  5'- uGGCgGCAGCGGCaaCCGUGuagccAACGCcCg -3'
miRNA:   3'- cUCGgCGUCGCCGa-GGCGC-----UUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 49285 0.66 0.599862
Target:  5'- -cGCCGC-GCGGagCCGCGAcuCGCUg -3'
miRNA:   3'- cuCGGCGuCGCCgaGGCGCUu-GCGAg -5'
6491 5' -61.5 NC_001847.1 + 131354 0.66 0.599862
Target:  5'- cGGCCGCgugcgcuucGGCGGCgcgggcgacacCCGCGAGgGcCUCu -3'
miRNA:   3'- cUCGGCG---------UCGCCGa----------GGCGCUUgC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 53248 0.66 0.599862
Target:  5'- uGGCUGCGGCGccgcCUCgGCgGGGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCc---GAGgCG-CUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 70099 0.66 0.599862
Target:  5'- cGGGCCaCAccGCGGCaaaaUCCGCcacguGGCGCUCg -3'
miRNA:   3'- -CUCGGcGU--CGCCG----AGGCGc----UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 35924 0.66 0.599862
Target:  5'- gGAGCCuuuGUGGCGGCgcgCCGCc-GCGCg- -3'
miRNA:   3'- -CUCGG---CGUCGCCGa--GGCGcuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 28541 0.66 0.599862
Target:  5'- cGGCCGCgugcgcuucGGCGGCgcgggcgacacCCGCGAGgGcCUCu -3'
miRNA:   3'- cUCGGCG---------UCGCCGa----------GGCGCUUgC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.