miRNA display CGI


Results 101 - 120 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 131354 0.66 0.599862
Target:  5'- cGGCCGCgugcgcuucGGCGGCgcgggcgacacCCGCGAGgGcCUCu -3'
miRNA:   3'- cUCGGCG---------UCGCCGa----------GGCGCUUgC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 35734 0.66 0.599862
Target:  5'- uGGCCGCGGUGGaguggCUGCagcaagcGCGCUCu -3'
miRNA:   3'- cUCGGCGUCGCCga---GGCGcu-----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 38297 0.66 0.599862
Target:  5'- uGGCgGCAGCGGCaaCCGUGuagccAACGCcCg -3'
miRNA:   3'- cUCGgCGUCGCCGa-GGCGC-----UUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 49285 0.66 0.599862
Target:  5'- -cGCCGC-GCGGagCCGCGAcuCGCUg -3'
miRNA:   3'- cuCGGCGuCGCCgaGGCGCUu-GCGAg -5'
6491 5' -61.5 NC_001847.1 + 47848 0.66 0.598862
Target:  5'- -cGUCGCAggaggucGCGuGCUgCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGU-------CGC-CGAgGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 53270 0.66 0.589873
Target:  5'- cGA-CCGC-GCGGCcgagUCCGaCGAacgcGCGCUCg -3'
miRNA:   3'- -CUcGGCGuCGCCG----AGGC-GCU----UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 63985 0.66 0.589873
Target:  5'- -uGCCGCAcCuGgUCCGCGAGCuccuGCUCg -3'
miRNA:   3'- cuCGGCGUcGcCgAGGCGCUUG----CGAG- -5'
6491 5' -61.5 NC_001847.1 + 110906 0.66 0.589873
Target:  5'- -cGCCGCgcGGCGGCUgaacguggagaUCGCcGAGCGCc- -3'
miRNA:   3'- cuCGGCG--UCGCCGA-----------GGCG-CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 93526 0.66 0.589873
Target:  5'- -cGCC-CGGCGGCcCCG-GAGCGCcCg -3'
miRNA:   3'- cuCGGcGUCGCCGaGGCgCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 30711 0.66 0.589873
Target:  5'- -cGCCGCGGU-GCUgCCGCG-GCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 58006 0.66 0.589873
Target:  5'- -cGCagGCGGCGGCggUCGCGcGCGCg- -3'
miRNA:   3'- cuCGg-CGUCGCCGa-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 133524 0.66 0.589873
Target:  5'- -cGCCGCGGU-GCUgCCGCG-GCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 116818 0.66 0.589873
Target:  5'- -cGCCcgGCAGCuGCUCCGCGugauuCGC-Cg -3'
miRNA:   3'- cuCGG--CGUCGcCGAGGCGCuu---GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 48196 0.66 0.589873
Target:  5'- -uGCCGCgccGGCGGCcagggCCGagGAGCGCa- -3'
miRNA:   3'- cuCGGCG---UCGCCGa----GGCg-CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 81845 0.66 0.589873
Target:  5'- -cGCCGCacuGGCGGCgaucgaGCGcGCGUUCg -3'
miRNA:   3'- cuCGGCG---UCGCCGagg---CGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 103484 0.66 0.589873
Target:  5'- aGAGCCGCAcuCGGa-CCGCGugUGUUCg -3'
miRNA:   3'- -CUCGGCGUc-GCCgaGGCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 12458 0.66 0.589873
Target:  5'- -cGCgCGCGGCGGagcCUCCGCGGcuucccGCGUg- -3'
miRNA:   3'- cuCG-GCGUCGCC---GAGGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 17088 0.66 0.589873
Target:  5'- cAGCCGCguaaaAGCGGCgcUCCauGUuAGCGCUCu -3'
miRNA:   3'- cUCGGCG-----UCGCCG--AGG--CGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 14635 0.66 0.589873
Target:  5'- cGA-CCGCGGC-GCUCgCGCGc-CGCUCg -3'
miRNA:   3'- -CUcGGCGUCGcCGAG-GCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 134082 0.66 0.589873
Target:  5'- uGGGaCGCGGaccagGGC-CCGCGGgagACGCUCg -3'
miRNA:   3'- -CUCgGCGUCg----CCGaGGCGCU---UGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.