miRNA display CGI


Results 141 - 160 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 3935 0.66 0.579914
Target:  5'- -cGCUgGCAGCGGg-CgGCGAGCGCg- -3'
miRNA:   3'- cuCGG-CGUCGCCgaGgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 33174 0.66 0.579914
Target:  5'- -cGCUGCAGCGGCuggccggcUCUGCGcccgacuuggcGGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCG--------AGGCGC-----------UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 121095 0.66 0.57892
Target:  5'- cGGCCGCgaaccuAGCGGCUC-GCGGccgaccaGCGcCUCu -3'
miRNA:   3'- cUCGGCG------UCGCCGAGgCGCU-------UGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 63752 0.67 0.573955
Target:  5'- -cGCCGCcuGGCGGCgcgggCCaggcccggagaccgcGCGGACGCg- -3'
miRNA:   3'- cuCGGCG--UCGCCGa----GG---------------CGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 69383 0.67 0.56999
Target:  5'- cGGCgCGCAGCuugcGC-CCGCGGgccaccACGCUCu -3'
miRNA:   3'- cUCG-GCGUCGc---CGaGGCGCU------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 22134 0.67 0.56999
Target:  5'- uGGGCC-CGGCGGCggCgGCGGcGCGCa- -3'
miRNA:   3'- -CUCGGcGUCGCCGa-GgCGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 124710 0.67 0.56999
Target:  5'- gGAGCCGggcgcgggGGCGGCagCGCGAACcGCg- -3'
miRNA:   3'- -CUCGGCg-------UCGCCGagGCGCUUG-CGag -5'
6491 5' -61.5 NC_001847.1 + 96572 0.67 0.56999
Target:  5'- gGAGCCuCcGCGGCUCCggcaGCaGGCGCUg -3'
miRNA:   3'- -CUCGGcGuCGCCGAGG----CGcUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 50518 0.67 0.56999
Target:  5'- cAGCCGCGGCauGGCcCCGCucGAAgGCg- -3'
miRNA:   3'- cUCGGCGUCG--CCGaGGCG--CUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 32890 0.67 0.56999
Target:  5'- aGGGCaCGguGCGcGCcgCgCGCGAGCGCc- -3'
miRNA:   3'- -CUCG-GCguCGC-CGa-G-GCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 36699 0.67 0.56999
Target:  5'- aGAGCgGCgugguggaGGCGGCUucggucgccgCCGUGAACGUg- -3'
miRNA:   3'- -CUCGgCG--------UCGCCGA----------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 63179 0.67 0.56999
Target:  5'- cGGUCGCGGUcgcgcgccauGGCcgagcCCGCGcGCGCUCu -3'
miRNA:   3'- cUCGGCGUCG----------CCGa----GGCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 124947 0.67 0.56999
Target:  5'- uGGGCC-CGGCGGCggCgGCGGcGCGCa- -3'
miRNA:   3'- -CUCGGcGUCGCCGa-GgCGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 109618 0.67 0.567022
Target:  5'- gGAGCCGguGCGcGCcaaCCGCGccuucguggaggucuCGCUCc -3'
miRNA:   3'- -CUCGGCguCGC-CGa--GGCGCuu-------------GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 101490 0.67 0.560109
Target:  5'- cGGGCCGCGGCcacGCg-CGCGcGCGcCUCg -3'
miRNA:   3'- -CUCGGCGUCGc--CGagGCGCuUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 69226 0.67 0.560109
Target:  5'- -uGCCGUcGcCGGCgCCGCGGcaACGCUg -3'
miRNA:   3'- cuCGGCGuC-GCCGaGGCGCU--UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 5924 0.67 0.560109
Target:  5'- cGGGCCcauUAGCGGUcgCCGCGAgcaaGCGCg- -3'
miRNA:   3'- -CUCGGc--GUCGCCGa-GGCGCU----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 24955 0.67 0.560109
Target:  5'- cGAGguacaCGCAGauGC-CCGuCGGGCGCUCg -3'
miRNA:   3'- -CUCg----GCGUCgcCGaGGC-GCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 103834 0.67 0.560109
Target:  5'- aGGCCGCcgcccGCGGCgcgCCGCagcagcacGAGCGuCUCc -3'
miRNA:   3'- cUCGGCGu----CGCCGa--GGCG--------CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 42430 0.67 0.560109
Target:  5'- -cGCCgGUGGCGGCgaugGCGcGCGCUCg -3'
miRNA:   3'- cuCGG-CGUCGCCGagg-CGCuUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.