miRNA display CGI


Results 161 - 180 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 42430 0.67 0.560109
Target:  5'- -cGCCgGUGGCGGCgaugGCGcGCGCUCg -3'
miRNA:   3'- cuCGG-CGUCGCCGagg-CGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 24955 0.67 0.560109
Target:  5'- cGAGguacaCGCAGauGC-CCGuCGGGCGCUCg -3'
miRNA:   3'- -CUCg----GCGUCgcCGaGGC-GCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 5924 0.67 0.560109
Target:  5'- cGGGCCcauUAGCGGUcgCCGCGAgcaaGCGCg- -3'
miRNA:   3'- -CUCGGc--GUCGCCGa-GGCGCU----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 103834 0.67 0.560109
Target:  5'- aGGCCGCcgcccGCGGCgcgCCGCagcagcacGAGCGuCUCc -3'
miRNA:   3'- cUCGGCGu----CGCCGa--GGCG--------CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 1021 0.67 0.560109
Target:  5'- aGGCCGCcgcccGCGGCgcgCCGCagcagcacGAGCGuCUCc -3'
miRNA:   3'- cUCGGCGu----CGCCGa--GGCG--------CUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 15248 0.67 0.560109
Target:  5'- cGGCgGCGGCGGCcacgCaCGCGAuCGC-Cg -3'
miRNA:   3'- cUCGgCGUCGCCGa---G-GCGCUuGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 2589 0.67 0.559124
Target:  5'- cGGCCGCcGCGGCcgCaCGCGAgcccgccGCGC-Cg -3'
miRNA:   3'- cUCGGCGuCGCCGa-G-GCGCU-------UGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 9230 0.67 0.558139
Target:  5'- gGAGUCGCGGgGGCggggcugauugaCCGC-AACGCUg -3'
miRNA:   3'- -CUCGGCGUCgCCGa-----------GGCGcUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 59205 0.67 0.557154
Target:  5'- -cGCCGCguguggcggcgcacGGCGGCgccaCCGCG--UGCUCg -3'
miRNA:   3'- cuCGGCG--------------UCGCCGa---GGCGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 82943 0.67 0.557154
Target:  5'- aGGCCGCGacccGCGGCcaggccgccugcgaUCUGUGGugGCUg -3'
miRNA:   3'- cUCGGCGU----CGCCG--------------AGGCGCUugCGAg -5'
6491 5' -61.5 NC_001847.1 + 28783 0.67 0.55617
Target:  5'- -uGCUGCAGCGGCgcgugcagggcugCCGgGGccACaGCUCg -3'
miRNA:   3'- cuCGGCGUCGCCGa------------GGCgCU--UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 131596 0.67 0.55617
Target:  5'- -uGCUGCAGCGGCgcgugcagggcugCCGgGGccACaGCUCg -3'
miRNA:   3'- cuCGGCGUCGCCGa------------GGCgCU--UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 106799 0.67 0.550277
Target:  5'- gGGGCCcggGCGcGCGGCcCCGCgGGGCGC-Cg -3'
miRNA:   3'- -CUCGG---CGU-CGCCGaGGCG-CUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 104694 0.67 0.550277
Target:  5'- cAGCaGCAGcCGGUUgcccagcgCCGCGAGCGCg- -3'
miRNA:   3'- cUCGgCGUC-GCCGA--------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 84378 0.67 0.550277
Target:  5'- cGGCCGCGgaccGCGGCagacCCGCGAcaauaaacacACGCa- -3'
miRNA:   3'- cUCGGCGU----CGCCGa---GGCGCU----------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 129327 0.67 0.550277
Target:  5'- -uGCCGgGcGCGGggCCGgGGGCGUUCg -3'
miRNA:   3'- cuCGGCgU-CGCCgaGGCgCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 92851 0.67 0.550277
Target:  5'- -cGCCGguGaCGGCUUCGCGcACGg-- -3'
miRNA:   3'- cuCGGCguC-GCCGAGGCGCuUGCgag -5'
6491 5' -61.5 NC_001847.1 + 64169 0.67 0.550277
Target:  5'- aGGCCGCuugcgcggacggGGCGGCgggCGCG-ACGCUg -3'
miRNA:   3'- cUCGGCG------------UCGCCGag-GCGCuUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 132968 0.67 0.550277
Target:  5'- -cGCCGCccaGGCggCGCGGGCGCUg -3'
miRNA:   3'- cuCGGCGucgCCGagGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 78671 0.67 0.550277
Target:  5'- -cGUCGcCGGCGuGCgcaCGCGGGCGCUg -3'
miRNA:   3'- cuCGGC-GUCGC-CGag-GCGCUUGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.