miRNA display CGI


Results 61 - 80 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 8056 0.68 0.492588
Target:  5'- aAGCCGC-GCGGC-CCGC--GCGCa- -3'
miRNA:   3'- cUCGGCGuCGCCGaGGCGcuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 8455 0.68 0.464794
Target:  5'- cGGGUCGgaGGCGGCgccgggCCGgGGgcgGCGCUCg -3'
miRNA:   3'- -CUCGGCg-UCGCCGa-----GGCgCU---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 9230 0.67 0.558139
Target:  5'- gGAGUCGCGGgGGCggggcugauugaCCGC-AACGCUg -3'
miRNA:   3'- -CUCGGCGUCgCCGa-----------GGCGcUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 9518 0.66 0.619901
Target:  5'- cGAGCCGagcgGGCGGCgcgcuagcgUCCGUGcgugcgccAGCGCUg -3'
miRNA:   3'- -CUCGGCg---UCGCCG---------AGGCGC--------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 9635 0.66 0.619901
Target:  5'- -cGCCGCGcCGGC-CCGC---CGCUCg -3'
miRNA:   3'- cuCGGCGUcGCCGaGGCGcuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 9810 0.68 0.47397
Target:  5'- cGGCCGCuggcguucagcGCGGCUCCGaaAACGCcCa -3'
miRNA:   3'- cUCGGCGu----------CGCCGAGGCgcUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 10570 0.66 0.619901
Target:  5'- cGGGCCcggcgcCGGCGGCccccCCGCGcGCGCg- -3'
miRNA:   3'- -CUCGGc-----GUCGCCGa---GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 10862 0.68 0.464794
Target:  5'- cGAGgCGCGGCGGg--CGCGGGCGCcCa -3'
miRNA:   3'- -CUCgGCGUCGCCgagGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 10895 0.69 0.446726
Target:  5'- gGAGCCGgAGCuuuGGC-CCGCu--CGCUCg -3'
miRNA:   3'- -CUCGGCgUCG---CCGaGGCGcuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 11148 0.68 0.47397
Target:  5'- gGAGCUGCGGCGGCUaaacuaccggcgUCGgGAGCugggGCUg -3'
miRNA:   3'- -CUCGGCGUCGCCGA------------GGCgCUUG----CGAg -5'
6491 5' -61.5 NC_001847.1 + 11241 0.69 0.420376
Target:  5'- gGAGCCGCcguuuucgGGaaGCUugCCGCGGGCGCUg -3'
miRNA:   3'- -CUCGGCG--------UCgcCGA--GGCGCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 11566 0.71 0.322859
Target:  5'- cAGCgGguGCGGCUgCCGCGGugccgguugcuucuGCGCUg -3'
miRNA:   3'- cUCGgCguCGCCGA-GGCGCU--------------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 11654 0.66 0.619901
Target:  5'- gGAGCCuuccgGCGGCGGUgaaGgGGGCGCUg -3'
miRNA:   3'- -CUCGG-----CGUCGCCGaggCgCUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 11754 0.72 0.290323
Target:  5'- cAGCCGCAcgaGGCUUugUGUGAGCGCUCc -3'
miRNA:   3'- cUCGGCGUcg-CCGAG--GCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 11856 0.66 0.629938
Target:  5'- -cGCCGCccuGCgGGCggCGCGAGCGUa- -3'
miRNA:   3'- cuCGGCGu--CG-CCGagGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 12458 0.66 0.589873
Target:  5'- -cGCgCGCGGCGGagcCUCCGCGGcuucccGCGUg- -3'
miRNA:   3'- cuCG-GCGUCGCC---GAGGCGCU------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 12639 0.66 0.628934
Target:  5'- cGGCCGCuGCGGCUgCGgGGgagaggaGCGUg- -3'
miRNA:   3'- cUCGGCGuCGCCGAgGCgCU-------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 13218 0.82 0.05961
Target:  5'- cGGGCCGCucGGCGaGCUCCGCGAugGC-Ca -3'
miRNA:   3'- -CUCGGCG--UCGC-CGAGGCGCUugCGaG- -5'
6491 5' -61.5 NC_001847.1 + 13338 0.72 0.310785
Target:  5'- cGGGCgGCgAGCaGGCgcCCGCGAggACGCUCc -3'
miRNA:   3'- -CUCGgCG-UCG-CCGa-GGCGCU--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 13476 0.75 0.180206
Target:  5'- cGGGCCGCaccccacagcGGCGGCcuUCCGCGAaguGCGCg- -3'
miRNA:   3'- -CUCGGCG----------UCGCCG--AGGCGCU---UGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.