miRNA display CGI


Results 101 - 120 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 17712 0.66 0.583893
Target:  5'- -cGCCGCAgugcacguacaGCGGCUCgGCguacGAggcggccacggccucGCGCUCg -3'
miRNA:   3'- cuCGGCGU-----------CGCCGAGgCG----CU---------------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 18220 0.71 0.339746
Target:  5'- cGGGCUGU-GCGGCUCUcgGCGcgUGCUCg -3'
miRNA:   3'- -CUCGGCGuCGCCGAGG--CGCuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 18555 0.67 0.530777
Target:  5'- aGAGCgGCAGC-GCUgCGCccaGAGCGCa- -3'
miRNA:   3'- -CUCGgCGUCGcCGAgGCG---CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 18626 0.67 0.521121
Target:  5'- -cGCgCGUAGCGcaggcagagguGCUCgGCGAGCGCg- -3'
miRNA:   3'- cuCG-GCGUCGC-----------CGAGgCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 18780 0.73 0.258593
Target:  5'- cGGCCGaCAGCGcgaGCUCCGCGGcggcgGCGCg- -3'
miRNA:   3'- cUCGGC-GUCGC---CGAGGCGCU-----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 18980 0.7 0.378623
Target:  5'- cGGCCGCGGCGcccGCggCCGCcAGCGcCUCg -3'
miRNA:   3'- cUCGGCGUCGC---CGa-GGCGcUUGC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 19250 0.66 0.619901
Target:  5'- cGAGCCGgccaAGCGGCgcgagCCGgCG-GCGCa- -3'
miRNA:   3'- -CUCGGCg---UCGCCGa----GGC-GCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 19316 0.66 0.628934
Target:  5'- cGGCCGCGGCcguGGCUguuaacgcaagcgCCGCGGccgggucuuGCGCg- -3'
miRNA:   3'- cUCGGCGUCG---CCGA-------------GGCGCU---------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 19353 1.08 0.000824
Target:  5'- gGAGCCGCAGCGGCUCCGCGAACGCUCu -3'
miRNA:   3'- -CUCGGCGUCGCCGAGGCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 19384 0.7 0.362719
Target:  5'- cGAGCCgGCuccccgcuCGGCUCCGCGGcgACGCa- -3'
miRNA:   3'- -CUCGG-CGuc------GCCGAGGCGCU--UGCGag -5'
6491 5' -61.5 NC_001847.1 + 19449 0.78 0.120195
Target:  5'- cGGGCCGCAGcCGGCUcucgcccCCGCGcAGcCGCUCa -3'
miRNA:   3'- -CUCGGCGUC-GCCGA-------GGCGC-UU-GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 19456 0.68 0.47397
Target:  5'- -uGCCGggcCAGCcGCUCCGCcGcGCGCUCc -3'
miRNA:   3'- cuCGGC---GUCGcCGAGGCG-CuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 20028 0.66 0.629938
Target:  5'- aGGGCgGCccuGCGGCcgCCGCccuGGGCGCg- -3'
miRNA:   3'- -CUCGgCGu--CGCCGa-GGCG---CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 20069 0.73 0.270933
Target:  5'- gGAGCgGCguGGCGGCUcCCGCG-GCGCg- -3'
miRNA:   3'- -CUCGgCG--UCGCCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 20469 0.71 0.332326
Target:  5'- aGGCCGCGGCGGCUgucgacguUgGCGAggaagACgGCUCg -3'
miRNA:   3'- cUCGGCGUCGCCGA--------GgCGCU-----UG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 20868 0.68 0.47397
Target:  5'- -cGCUGCGGCGGCgcUCUuuauacuggGCGGACGCc- -3'
miRNA:   3'- cuCGGCGUCGCCG--AGG---------CGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 21195 0.67 0.517278
Target:  5'- -cGCC-CGGCGGCguaggagacgccgCCGCGAccgcGCGCUg -3'
miRNA:   3'- cuCGGcGUCGCCGa------------GGCGCU----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 21361 0.7 0.386749
Target:  5'- -cGCCGuCGGCGGCUcgggCCGCcucGGGCgGCUCg -3'
miRNA:   3'- cuCGGC-GUCGCCGA----GGCG---CUUG-CGAG- -5'
6491 5' -61.5 NC_001847.1 + 21736 0.68 0.492588
Target:  5'- cGGGCCgGCGcCGGC-CCGCGcGCGCg- -3'
miRNA:   3'- -CUCGG-CGUcGCCGaGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 21969 0.68 0.492588
Target:  5'- uGGGCCGCGGCgccGGUUgCCGCccGCGgUCg -3'
miRNA:   3'- -CUCGGCGUCG---CCGA-GGCGcuUGCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.