miRNA display CGI


Results 121 - 140 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 22134 0.67 0.56999
Target:  5'- uGGGCC-CGGCGGCggCgGCGGcGCGCa- -3'
miRNA:   3'- -CUCGGcGUCGCCGa-GgCGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 22194 0.7 0.373803
Target:  5'- aGAGCUGCAGCaGCgccucccagcacgcgUCCGUGGGCGUg- -3'
miRNA:   3'- -CUCGGCGUCGcCG---------------AGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 22399 0.75 0.198295
Target:  5'- cGGGCCGCGGCGaGCgugcucgUCCGCGGGgGCg- -3'
miRNA:   3'- -CUCGGCGUCGC-CG-------AGGCGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 24407 0.72 0.297025
Target:  5'- cGGCCGUGGCGGCcgCCGUGGACagaGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa-GGCGCUUG---CGag -5'
6491 5' -61.5 NC_001847.1 + 24955 0.67 0.560109
Target:  5'- cGAGguacaCGCAGauGC-CCGuCGGGCGCUCg -3'
miRNA:   3'- -CUCg----GCGUCgcCGaGGC-GCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 25534 0.72 0.283741
Target:  5'- uGGCgCGCAcCGGCUCCGCGAccucggacacgaGCGCg- -3'
miRNA:   3'- cUCG-GCGUcGCCGAGGCGCU------------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 25935 0.71 0.330123
Target:  5'- uGGCCGUggagagauggAGCGGCUagggccaaagggggCCGCGGGCGgUCa -3'
miRNA:   3'- cUCGGCG----------UCGCCGA--------------GGCGCUUGCgAG- -5'
6491 5' -61.5 NC_001847.1 + 26456 0.68 0.464794
Target:  5'- aGGCCGC-GCGGCUguUCGCcAGCGCg- -3'
miRNA:   3'- cUCGGCGuCGCCGA--GGCGcUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 26514 0.67 0.550277
Target:  5'- -uGCCGgGcGCGGggCCGgGGGCGUUCg -3'
miRNA:   3'- cuCGGCgU-CGCCgaGGCgCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 27123 0.71 0.354943
Target:  5'- cGGCCGCcGCGGCgagagagCCGgCGAGgGCUUc -3'
miRNA:   3'- cUCGGCGuCGCCGa------GGC-GCUUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 27160 0.71 0.354172
Target:  5'- cAGCCGCGGCGGCcagcccaauaaugUCgGCgGggUGCUUc -3'
miRNA:   3'- cUCGGCGUCGCCG-------------AGgCG-CuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 27518 0.75 0.180206
Target:  5'- -cGCCGCGGCGGCggCGgGGACGCcCg -3'
miRNA:   3'- cuCGGCGUCGCCGagGCgCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 27740 0.7 0.386749
Target:  5'- aAGCCGCGGCGGCgguugCgGCgGGGgGCUg -3'
miRNA:   3'- cUCGGCGUCGCCGa----GgCG-CUUgCGAg -5'
6491 5' -61.5 NC_001847.1 + 27948 0.71 0.332326
Target:  5'- uGGGCCGCGGCGcGCgcgCuCGCGGuCGCg- -3'
miRNA:   3'- -CUCGGCGUCGC-CGa--G-GCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 27996 0.68 0.492588
Target:  5'- uGGGCCGCGcugcagcgcGCGGCgugCCGCgcuuacGAGCGCc- -3'
miRNA:   3'- -CUCGGCGU---------CGCCGa--GGCG------CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 28402 0.71 0.339746
Target:  5'- -cGCCGCGGCGcCagCGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCcGagGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 28465 0.73 0.258593
Target:  5'- uGGCCGCcGUGGCacgacgcgCCGCGGACGC-Cg -3'
miRNA:   3'- cUCGGCGuCGCCGa-------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 28541 0.66 0.599862
Target:  5'- cGGCCGCgugcgcuucGGCGGCgcgggcgacacCCGCGAGgGcCUCu -3'
miRNA:   3'- cUCGGCG---------UCGCCGa----------GGCGCUUgC-GAG- -5'
6491 5' -61.5 NC_001847.1 + 28630 0.68 0.47397
Target:  5'- cGGCCGCGG-GGC-CCGCGGcCGUguUCg -3'
miRNA:   3'- cUCGGCGUCgCCGaGGCGCUuGCG--AG- -5'
6491 5' -61.5 NC_001847.1 + 28783 0.67 0.55617
Target:  5'- -uGCUGCAGCGGCgcgugcagggcugCCGgGGccACaGCUCg -3'
miRNA:   3'- cuCGGCGUCGCCGa------------GGCgCU--UG-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.