miRNA display CGI


Results 141 - 160 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 28962 0.7 0.370613
Target:  5'- uGGCCGCGGCGGgguuuacgCCGgGAACGUg- -3'
miRNA:   3'- cUCGGCGUCGCCga------GGCgCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 29017 0.79 0.095564
Target:  5'- cGGCgGCAGCGGCgcCCGCGccGCGCUCg -3'
miRNA:   3'- cUCGgCGUCGCCGa-GGCGCu-UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 29115 0.7 0.378623
Target:  5'- cGGCgCGCgAGCGGCUgCGCGAGCugGCg- -3'
miRNA:   3'- cUCG-GCG-UCGCCGAgGCGCUUG--CGag -5'
6491 5' -61.5 NC_001847.1 + 29232 0.7 0.362719
Target:  5'- cGGGCCGCGGCcuGCcggCCGCGGccuGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGc-CGa--GGCGCU---UGCGag -5'
6491 5' -61.5 NC_001847.1 + 29258 0.68 0.473048
Target:  5'- cGGCCGCgcacggacuacguGGCGGCgaUUCGCGcGGCGCUg -3'
miRNA:   3'- cUCGGCG-------------UCGCCG--AGGCGC-UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 29307 0.74 0.208678
Target:  5'- aGGCCGCGGCcGCggacaagcgagCCGCGAGCGCg- -3'
miRNA:   3'- cUCGGCGUCGcCGa----------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 29308 0.72 0.290323
Target:  5'- cGAGCUGCucggcGCGGC-CCGCG-ACGCg- -3'
miRNA:   3'- -CUCGGCGu----CGCCGaGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 29338 0.7 0.378623
Target:  5'- gGAGCgCGC-GCGGCUCCaGCGcgcggccccggcGGCGCUg -3'
miRNA:   3'- -CUCG-GCGuCGCCGAGG-CGC------------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 29406 0.72 0.303845
Target:  5'- cGGCCGCgcuGGCGGCgcggaCCGUGGcccCGCUCg -3'
miRNA:   3'- cUCGGCG---UCGCCGa----GGCGCUu--GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 29458 0.7 0.403341
Target:  5'- -cGgCGCGGCGGC-CCGCGcgucggccugGGCGCUg -3'
miRNA:   3'- cuCgGCGUCGCCGaGGCGC----------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 29481 0.68 0.502022
Target:  5'- cGGCCGaGGCGGCacgcucuccggCCGCGGgcgGCGCUUn -3'
miRNA:   3'- cUCGGCgUCGCCGa----------GGCGCU---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 29520 0.75 0.193985
Target:  5'- cGGCCGCAGa-GCUCgcccgcgcggCGCGGGCGCUCg -3'
miRNA:   3'- cUCGGCGUCgcCGAG----------GCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 30057 0.68 0.511535
Target:  5'- -cGCCGaCGGCGGCUuccgCCGCGugcCGCcCg -3'
miRNA:   3'- cuCGGC-GUCGCCGA----GGCGCuu-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 30146 0.69 0.446726
Target:  5'- aGGUCGCGgcGCGGCU-CGCGGAccaccCGCUCu -3'
miRNA:   3'- cUCGGCGU--CGCCGAgGCGCUU-----GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 30244 0.73 0.258593
Target:  5'- -cGCCGC-GCgGGCcCCGCGgGGCGCUCg -3'
miRNA:   3'- cuCGGCGuCG-CCGaGGCGC-UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 30421 0.78 0.111581
Target:  5'- -cGCCGCGGCgGGCUCuCGCacGCGCUCg -3'
miRNA:   3'- cuCGGCGUCG-CCGAG-GCGcuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 30555 0.71 0.339746
Target:  5'- -cGUCGC-GCGGCUCCGCG-GCGUc- -3'
miRNA:   3'- cuCGGCGuCGCCGAGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 30598 0.67 0.521121
Target:  5'- -cGCCGCguAGCGGCcccggggccgCCGCGcAGCGC-Cg -3'
miRNA:   3'- cuCGGCG--UCGCCGa---------GGCGC-UUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 30711 0.66 0.589873
Target:  5'- -cGCCGCGGU-GCUgCCGCG-GCGCa- -3'
miRNA:   3'- cuCGGCGUCGcCGA-GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 30770 0.71 0.347285
Target:  5'- -cGCUGCAGCGccgcGCgUCUGCGGGCGCg- -3'
miRNA:   3'- cuCGGCGUCGC----CG-AGGCGCUUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.