miRNA display CGI


Results 161 - 180 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 30857 0.73 0.240949
Target:  5'- -cGCCGCuGCGGCUcugCCGCGGcggcaacguGCGCUa -3'
miRNA:   3'- cuCGGCGuCGCCGA---GGCGCU---------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 31153 0.73 0.240949
Target:  5'- cGGCCGCGGCGGUggccuUCUGCGcggccGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCG-----AGGCGCu----UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 31225 0.78 0.111581
Target:  5'- aGGCCGCGGCGGCgccgcCCGCGGcCGCg- -3'
miRNA:   3'- cUCGGCGUCGCCGa----GGCGCUuGCGag -5'
6491 5' -61.5 NC_001847.1 + 31269 0.66 0.589873
Target:  5'- uGGGaCGCGGaccagGGC-CCGCGGgagACGCUCg -3'
miRNA:   3'- -CUCgGCGUCg----CCGaGGCGCU---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 31303 0.71 0.325026
Target:  5'- -uGCUGCuGCGGCgcgCCGCGGGCGg-- -3'
miRNA:   3'- cuCGGCGuCGCCGa--GGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 31429 0.73 0.252597
Target:  5'- cAGCCGCGGCGGacgUCGCuGGCGCUg -3'
miRNA:   3'- cUCGGCGUCGCCga-GGCGcUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 31443 0.71 0.317846
Target:  5'- cGGCCGCGGCGGCcCCggcGCGGGcCGC-Cg -3'
miRNA:   3'- cUCGGCGUCGCCGaGG---CGCUU-GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 31805 0.66 0.609873
Target:  5'- cGGCCGUGGCGGUgggcggCGCGGGgGCa- -3'
miRNA:   3'- cUCGGCGUCGCCGag----GCGCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 31919 0.76 0.166885
Target:  5'- cGGCCGCGgccGCGGCUCCGCGGcggguaaGCGgaCg -3'
miRNA:   3'- cUCGGCGU---CGCCGAGGCGCU-------UGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 31960 0.77 0.130085
Target:  5'- -uGCCGCGGCGGCggcgggccCCGUGGACGC-Cg -3'
miRNA:   3'- cuCGGCGUCGCCGa-------GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 31996 0.68 0.464794
Target:  5'- cGAGCCGCGaggaccuucGCGcGC-CgGCGGcccGCGCUCg -3'
miRNA:   3'- -CUCGGCGU---------CGC-CGaGgCGCU---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 32194 0.66 0.639976
Target:  5'- cGGCCGgGGCccgaGGC-CCGCGGGCGg-- -3'
miRNA:   3'- cUCGGCgUCG----CCGaGGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 32317 0.68 0.502022
Target:  5'- gGGGUCGCAgGgGGC-CCGCGcGGCGCg- -3'
miRNA:   3'- -CUCGGCGU-CgCCGaGGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 32852 0.67 0.521121
Target:  5'- cGAGaCCGCGGC-GCUCgCGCGcgagauccuGGCGCUg -3'
miRNA:   3'- -CUC-GGCGUCGcCGAG-GCGC---------UUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 32890 0.67 0.56999
Target:  5'- aGGGCaCGguGCGcGCcgCgCGCGAGCGCc- -3'
miRNA:   3'- -CUCG-GCguCGC-CGa-G-GCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 32918 0.66 0.603864
Target:  5'- gGGGCCGCggacgggaggaggccGGCGGCggggCCGgGGGgGCg- -3'
miRNA:   3'- -CUCGGCG---------------UCGCCGa---GGCgCUUgCGag -5'
6491 5' -61.5 NC_001847.1 + 32997 0.66 0.604865
Target:  5'- cGGGCCGCGccgccguggucgcGCGGagugccgccgcccuCUCCGCcGAgcuggacGCGCUCg -3'
miRNA:   3'- -CUCGGCGU-------------CGCC--------------GAGGCG-CU-------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 33002 0.69 0.43784
Target:  5'- cGGCCGgAGCGGC-CgGgGGGCGCg- -3'
miRNA:   3'- cUCGGCgUCGCCGaGgCgCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 33064 0.68 0.490711
Target:  5'- cGAGgCGCuGCGGCaguacuuUCUGCGcggcgcgcaguacAGCGCUCg -3'
miRNA:   3'- -CUCgGCGuCGCCG-------AGGCGC-------------UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 33064 0.66 0.619901
Target:  5'- cGGGUCGCGcGCGGC-CCGCGccUGCc- -3'
miRNA:   3'- -CUCGGCGU-CGCCGaGGCGCuuGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.