miRNA display CGI


Results 81 - 100 of 707 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 117891 0.67 0.540497
Target:  5'- --uCCGCAaCGGCUaccCCGUGGAgGCUCg -3'
miRNA:   3'- cucGGCGUcGCCGA---GGCGCUUgCGAG- -5'
6491 5' -61.5 NC_001847.1 + 117380 0.69 0.446726
Target:  5'- gGAGCgcaaGUGGauGCUCUGCGAGCGCg- -3'
miRNA:   3'- -CUCGg---CGUCgcCGAGGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 116818 0.66 0.589873
Target:  5'- -cGCCcgGCAGCuGCUCCGCGugauuCGC-Cg -3'
miRNA:   3'- cuCGG--CGUCGcCGAGGCGCuu---GCGaG- -5'
6491 5' -61.5 NC_001847.1 + 116593 0.66 0.599862
Target:  5'- uGGgCGCAGCGcugccGCUCUGCG-GCGCg- -3'
miRNA:   3'- cUCgGCGUCGC-----CGAGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 116395 0.69 0.416934
Target:  5'- uAGCCGCGGCGGCggcgcucugggccCCGgGccgcGCGCUUg -3'
miRNA:   3'- cUCGGCGUCGCCGa------------GGCgCu---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 116250 0.66 0.629938
Target:  5'- uGGCgGUAcGCGGCgCUGCGGAcucuggcgcCGCUCg -3'
miRNA:   3'- cUCGgCGU-CGCCGaGGCGCUU---------GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 116143 0.7 0.362719
Target:  5'- gGGGCgCGCGGCccgaggcgcuGGCggCCGCGGGCGC-Cg -3'
miRNA:   3'- -CUCG-GCGUCG----------CCGa-GGCGCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 115900 0.69 0.43784
Target:  5'- -cGCCGCuuGGcCGGCUCgCGCaGGCGCUg -3'
miRNA:   3'- cuCGGCG--UC-GCCGAG-GCGcUUGCGAg -5'
6491 5' -61.5 NC_001847.1 + 115813 0.73 0.237543
Target:  5'- cGGCCGCGGCGcuuGCguuaacagccacggCCGCGGccGCGCUCg -3'
miRNA:   3'- cUCGGCGUCGC---CGa-------------GGCGCU--UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 115798 0.88 0.022144
Target:  5'- gGAGCCGCuGCGGCUCCGCGcgcuGCGCUg -3'
miRNA:   3'- -CUCGGCGuCGCCGAGGCGCu---UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 115761 0.71 0.354943
Target:  5'- gGAGCCGaCGGggagcCGGCUCgGCcaGAGCGUUCg -3'
miRNA:   3'- -CUCGGC-GUC-----GCCGAGgCG--CUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 115703 0.66 0.629938
Target:  5'- uGGCCcgGCAGCgGGCg-CGCGGccuuugGCGCUCc -3'
miRNA:   3'- cUCGG--CGUCG-CCGagGCGCU------UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 115702 0.75 0.180206
Target:  5'- aGAGCCgGCuGCGGC-CCGUGuGCGCUUg -3'
miRNA:   3'- -CUCGG-CGuCGCCGaGGCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 115576 0.69 0.43784
Target:  5'- cGGGCCGCGGCGa--UCGCGGGCGUcgaUCg -3'
miRNA:   3'- -CUCGGCGUCGCcgaGGCGCUUGCG---AG- -5'
6491 5' -61.5 NC_001847.1 + 115044 0.67 0.521121
Target:  5'- cGAGuCCGgGGCaGaGCUCCaGCuGGCGCUCg -3'
miRNA:   3'- -CUC-GGCgUCG-C-CGAGG-CGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 114737 0.66 0.639976
Target:  5'- cGGGaCCGguGcCGGCggucgcggUCGCGGuCGCUCu -3'
miRNA:   3'- -CUC-GGCguC-GCCGa-------GGCGCUuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 114685 0.71 0.347285
Target:  5'- cAGCCGCcGCGGC-CUGCuGGACGCc- -3'
miRNA:   3'- cUCGGCGuCGCCGaGGCG-CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 114291 0.71 0.33159
Target:  5'- -cGCCGCAGCGcagacucGCUuuGCGAccGCGCg- -3'
miRNA:   3'- cuCGGCGUCGC-------CGAggCGCU--UGCGag -5'
6491 5' -61.5 NC_001847.1 + 114158 0.7 0.369818
Target:  5'- cAGCaUGCAGCGGCg-CGCGcucacugGGCGCUCg -3'
miRNA:   3'- cUCG-GCGUCGCCGagGCGC-------UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 113940 0.74 0.229753
Target:  5'- cGGUCGCGGCGGCgucuccuacgCCGCcGGGCGCgUCg -3'
miRNA:   3'- cUCGGCGUCGCCGa---------GGCG-CUUGCG-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.