miRNA display CGI


Results 101 - 120 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 113772 0.7 0.362719
Target:  5'- aGAGCCGCccgaGGCGGCccgagCCGcCGAcgGCGCg- -3'
miRNA:   3'- -CUCGGCG----UCGCCGa----GGC-GCU--UGCGag -5'
6491 5' -61.5 NC_001847.1 + 113708 0.69 0.446726
Target:  5'- gGAGCCGgAGCuuuGGC-CCGCu--CGCUCg -3'
miRNA:   3'- -CUCGGCgUCG---CCGaGGCGcuuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 113383 0.66 0.619901
Target:  5'- cGGGCCcggcgcCGGCGGCccccCCGCGcGCGCg- -3'
miRNA:   3'- -CUCGGc-----GUCGCCGa---GGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 112864 0.69 0.420376
Target:  5'- cGGCCuCGGCGGCgCUGCcuacGGCGCUCa -3'
miRNA:   3'- cUCGGcGUCGCCGaGGCGc---UUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 111268 0.68 0.464794
Target:  5'- cGGGUCGgaGGCGGCgccgggCCGgGGgcgGCGCUCg -3'
miRNA:   3'- -CUCGGCg-UCGCCGa-----GGCgCU---UGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 111076 0.66 0.618898
Target:  5'- -uGCCGCGGgccugggccCGGCUgCGCGAgaaggucGCGCg- -3'
miRNA:   3'- cuCGGCGUC---------GCCGAgGCGCU-------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 110906 0.66 0.589873
Target:  5'- -cGCCGCgcGGCGGCUgaacguggagaUCGCcGAGCGCc- -3'
miRNA:   3'- cuCGGCG--UCGCCGA-----------GGCG-CUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 110809 0.7 0.386749
Target:  5'- aGGCCGCGcGCGGCguggCGCGccacCGCUCg -3'
miRNA:   3'- cUCGGCGU-CGCCGag--GCGCuu--GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 110352 0.68 0.47397
Target:  5'- aGGCCGCgAGgGcGUUgUGUGGACGCUCu -3'
miRNA:   3'- cUCGGCG-UCgC-CGAgGCGCUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 109618 0.67 0.567022
Target:  5'- gGAGCCGguGCGcGCcaaCCGCGccuucguggaggucuCGCUCc -3'
miRNA:   3'- -CUCGGCguCGC-CGa--GGCGCuu-------------GCGAG- -5'
6491 5' -61.5 NC_001847.1 + 109439 0.69 0.455712
Target:  5'- cGGGCCGCAGUGGCggcuuacgUCgGCGAGguCGUg- -3'
miRNA:   3'- -CUCGGCGUCGCCG--------AGgCGCUU--GCGag -5'
6491 5' -61.5 NC_001847.1 + 108031 0.73 0.235295
Target:  5'- -cGCCGCGGCGGC-CgGCGGggcGCGCg- -3'
miRNA:   3'- cuCGGCGUCGCCGaGgCGCU---UGCGag -5'
6491 5' -61.5 NC_001847.1 + 107993 0.66 0.629938
Target:  5'- uGGCCGCcGCGGCUgCGCcccccGGACGg-- -3'
miRNA:   3'- cUCGGCGuCGCCGAgGCG-----CUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 107852 0.7 0.386749
Target:  5'- cGGGCgaccgGCGGCGGCUCCGacgGGACGgaCg -3'
miRNA:   3'- -CUCGg----CGUCGCCGAGGCg--CUUGCgaG- -5'
6491 5' -61.5 NC_001847.1 + 107799 0.7 0.378623
Target:  5'- gGGGCUGCGGCGGC--CGCGGcaaaGCGCg- -3'
miRNA:   3'- -CUCGGCGUCGCCGagGCGCU----UGCGag -5'
6491 5' -61.5 NC_001847.1 + 107641 0.68 0.492588
Target:  5'- -cGCCGCGGCGGCggCCGa-GGC-CUCu -3'
miRNA:   3'- cuCGGCGUCGCCGa-GGCgcUUGcGAG- -5'
6491 5' -61.5 NC_001847.1 + 107438 0.71 0.354943
Target:  5'- -cGgCGCgGGCGGC-CCGCcGGCGCUCg -3'
miRNA:   3'- cuCgGCG-UCGCCGaGGCGcUUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 107415 0.69 0.429056
Target:  5'- -cGCCGCcGCGGCUuccgCCGCuGACGCc- -3'
miRNA:   3'- cuCGGCGuCGCCGA----GGCGcUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 107171 0.71 0.347285
Target:  5'- cGGCCGCGGCcGCcuccaccgcgaCCGCGAGCGCg- -3'
miRNA:   3'- cUCGGCGUCGcCGa----------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 106799 0.67 0.550277
Target:  5'- gGGGCCcggGCGcGCGGCcCCGCgGGGCGC-Cg -3'
miRNA:   3'- -CUCGG---CGU-CGCCGaGGCG-CUUGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.